View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_low_29 (Length: 232)
Name: NF16923_low_29
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5795662 - 5795885
Alignment:
| Q |
1 |
cagcaacatttcggttcatttctcggctcaaatgccccacacctcaacaaattctcccttgtaggtaaacaacgttgaagcatttgctaag-aaagataa |
99 |
Q |
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| T |
5795662 |
cagcaacatttcggttcatttcccggctcaaatgccccacacctcaacaaattctcccttgtaggtaaacagcgttgaagcatttgctaagaaaagataa |
5795761 |
T |
|
| Q |
100 |
cgacttttaacggatcaaagcttttccaaacccttcccaataaaatggcactctatgccccccnnnnnnngaaagtagaggacatgttgctcaagataac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
5795762 |
tgacttttaacggatcaaagcttttccaaacccttcccaataaaatggcactctatgccccccaaaaaaagaaagtagaggacatgttgctgaagataac |
5795861 |
T |
|
| Q |
200 |
cttcatactacacaagttctctgc |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
5795862 |
cttcatactacacaagttctctgc |
5795885 |
T |
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