View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_low_31 (Length: 205)
Name: NF16923_low_31
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 18252766 - 18252602
Alignment:
| Q |
14 |
aagaatatccagccgggccatttggcgcattgtaatctgctacgcagaaatcgactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagat |
113 |
Q |
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| T |
18252766 |
aagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagat |
18252667 |
T |
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| Q |
114 |
tgttagaatcatcttcatgtttttgttgttattgttgataatgttatattttgtgtgtatttgtggtcaaattg |
187 |
Q |
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| T |
18252666 |
agttagaatcatcttca---------tgttattgttgataatgttatattgtgtgtgtatttgtggtcaaattg |
18252602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 18256802 - 18256966
Alignment:
| Q |
14 |
aagaatatccagccgggccatttggcgcattgtaatctgctacgcagaaatcgactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagat |
113 |
Q |
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| T |
18256802 |
aagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagat |
18256901 |
T |
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| Q |
114 |
tgttagaatcatcttcatgtttttgttgttattgttgataatgttatattttgtgtgtatttgtggtcaaattg |
187 |
Q |
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| T |
18256902 |
agttagaatcatcttca---------tgttattgttgataatgttatattgtgtgtgtatttgtggtcaaattg |
18256966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 18245662 - 18245545
Alignment:
| Q |
14 |
aagaatatccagccgggccatttggcgcattgtaatctgctacgcagaaatcgactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagat |
113 |
Q |
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|||||||||| || ||||||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| |||| |
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| T |
18245662 |
aagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggagat |
18245563 |
T |
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| Q |
114 |
tgttagaatcatcttcat |
131 |
Q |
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| T |
18245562 |
agctacaatcatcttcat |
18245545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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