View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16923_low_4 (Length: 585)
Name: NF16923_low_4
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 54 - 565
Target Start/End: Complemental strand, 35288924 - 35288416
Alignment:
| Q |
54 |
gaatacaacatatcactcttcttcaatacatagatttgatttactttaggttccttgtcgttaggaaacaaaatcttttagcaccaaaaatatctgaata |
153 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35288924 |
gaatacaacatatcactcttcttcaatatatagatttgatttactttaggttccttgtcgttaggaaacaaaatcttttagcaccaaaaatatctgaata |
35288825 |
T |
|
| Q |
154 |
aacaatgtttctgttctgctaattttgaaggcttttgcgccgtttgcttttgcattagattgctgcaatgaatgtcatgtggatatggtatttgaaaact |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35288824 |
aacaatgtttctgttctgctaattttgaaggcttttgcgccgtttgcttttgcattagattgctgcaatggatgtcatgtggatatggtatttgaaaact |
35288725 |
T |
|
| Q |
254 |
aaacaaaaataaagccgcagaaatggaacaaaccttagcctgaaaaggtaaattaagctgattaaattattaattctacggtatatttttgacatacnnn |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35288724 |
aaacaaaaataaagccgcagaaatggaacaaaccttagcctgaaaaggtaaattaagctgattaaattattaattctacggtatatttttgacatgcttt |
35288625 |
T |
|
| Q |
354 |
nnnnggaaaataatgtttgaaacatccatacacccccttttatacactttgagaaagaaagaaataaaggaagtaatgtgatatatttctgatgtaataa |
453 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
35288624 |
ttttggaaaataatgtttg-aacatccatacaccccgtt---tacactttgagaaagaaagaaataatggaagtaatgtgatatatttgagatgtaataa |
35288529 |
T |
|
| Q |
454 |
aaataagagatagagcagatatgaaaggttgtt-aaagagtgtaagg-aaaattgaaatgttgaaatatccttatcannnnnnnnctcaacagcgcacat |
551 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35288528 |
aaataagagatagagcaaatatgaaaggttgttaaaagagtgtaaggaaaaattgaaatgttgaaatatccttatca-tttttttctcaacagcgcacat |
35288430 |
T |
|
| Q |
552 |
ataggcggttaggg |
565 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35288429 |
ataggcggttaggg |
35288416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35288948 - 35288915
Alignment:
| Q |
1 |
ctagacgaagttgccactgttttggaatacaaca |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35288948 |
ctagacgaagttgccactgttttggaatacaaca |
35288915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University