View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_low_7 (Length: 506)
Name: NF16923_low_7
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 263 - 490
Target Start/End: Original strand, 5795453 - 5795680
Alignment:
| Q |
263 |
caaaccactgccaaggcatggttatagaagcaaccccttgactttcttatttttcctaagacataaacaacaattttctagcaagacaaaagaggtcccc |
362 |
Q |
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| T |
5795453 |
caaaccactgccaaggcatggttatagaagcaaccccttggctttcttatttttcctaagacataaacaacaattttctagcaagacaaaagaggtcccc |
5795552 |
T |
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| Q |
363 |
aaaccgtatcatggatacgcctaaccaatgaaaaatcttataccaaatttcattcgcaaactcacactttgcaaataggttgtcttccgtttccttcacc |
462 |
Q |
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| T |
5795553 |
aaaccgtatcatggatacgcctaaccaatgaaaaatcttataccaaatttcattcgcaaactcacactttgcaaatgggttgtcttccgtttccttcacc |
5795652 |
T |
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| Q |
463 |
ctcgaaaaccagcaacatttcggttcat |
490 |
Q |
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| T |
5795653 |
ctcgaaaaccagcaacatttcggttcat |
5795680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 5794400 - 5794580
Alignment:
| Q |
19 |
gtaatcaacgtatcaacaatcacattttgaatggacattgcaactaaagtttaatgcagattttttatgtcaataatgtgatggcgactacaaataatta |
118 |
Q |
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| T |
5794400 |
gtaatcaacgtatcaacaatcacattttgaatggacattgcaactaaagtttaatgcagattttttatgtcaataatgtgatggcgactacaaataatta |
5794499 |
T |
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| Q |
119 |
atcgttttgctaagtgatttttgtttttgatcgggttttgctaagtggtaggtgagcataatagttctccatgataaagata |
200 |
Q |
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| T |
5794500 |
atcgttttgctaagtgattttt-tttttgatcgggttttgctaagtggtaggtgagcataatagttctccatgataaagata |
5794580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 5795428 - 5795461
Alignment:
| Q |
192 |
ataaagatacattacaatcgattaacaaaccact |
225 |
Q |
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| T |
5795428 |
ataaagatacattacaatcgattaacaaaccact |
5795461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 490
Target Start/End: Original strand, 13369935 - 13370022
Alignment:
| Q |
403 |
taccaaatttcattcgcaaactcacactttgcaaataggttgtcttccgtttccttcaccctcgaaaaccagcaacatttcggttcat |
490 |
Q |
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| T |
13369935 |
taccaaattgcacttgcaaactcacattttgtgaataggtggtcctccgtttccttcaccccgggacaccaacaacaattcggttcat |
13370022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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