View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_low_8 (Length: 471)
Name: NF16923_low_8
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Complemental strand, 32600988 - 32600560
Alignment:
| Q |
12 |
cattttcttcgagtaaacttaatattataactggaatagtnnnnnnnntcaattattttcttcattttcttatattatgaccaactaactttattccatc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600988 |
cattttcttcgagtaaacttaatattataactggaatagtaaaaaaaatcaattattttcttcattttcttatattatgaccaactaactttattccatc |
32600889 |
T |
|
| Q |
112 |
cct-agcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaactaacctcactagtaatgtta |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32600888 |
ccttagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaattaacctcactagtaatgtta |
32600789 |
T |
|
| Q |
211 |
tgcatgttaaacttaagatcattacaagtatatcaaactccaatattaatttctcatatgtgccattaatgttttgatattaattagatcctgatatgct |
310 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
32600788 |
tgcatgttaaacttaagatcattacaagtacatcaaactccaatattaattcctcgtatgtgtcattaatgtttggat----attagatcctgatatgct |
32600693 |
T |
|
| Q |
311 |
cgaagttggaaatggaggaatgacaacagaagaatatcgtgcccatttcagcatctgggcattagctaaggtgcatgaaataatttttatatacctattg |
410 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600692 |
tgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatctgggcattagctaaggtgcatgaaataatttttatatacctattg |
32600593 |
T |
|
| Q |
411 |
ttgagacaaagtaattaatatgtcattaatttg |
443 |
Q |
| |
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||||||||||||||| |||||||||||||||| |
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| T |
32600592 |
ttgagacaaagtaatatatatgtcattaatttg |
32600560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 61 - 443
Target Start/End: Complemental strand, 32590489 - 32590112
Alignment:
| Q |
61 |
caattattttcttcattttcttatattatgaccaactaactttattccatccctagcatgacttctataatagatgtaaatgacaaatgggcatcttatg |
160 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
32590489 |
caattattttcttcattttcctatattatgaccaactaactttattcc-tccctaggatgacttctataatagatgtaaacgataaatgggcatcttatg |
32590391 |
T |
|
| Q |
161 |
ctggacctggaggatggaatggtaattaactaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtatatcaaactccaatattaat |
260 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
32590390 |
ctggacctggaggatggaatggtaattaattaacctcactaataattttatgaatgttaagtttaagatcattacaagtacatcaaactccaatattaat |
32590291 |
T |
|
| Q |
261 |
ttctcatatgtgccattaatgttttgatattaattagatcctgatatgctcgaagttggaaatggaggaatgacaacagaagaatatcgtgcccatttca |
360 |
Q |
| |
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| ||| |||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
32590290 |
tcctcgtatgtgtcattaatgtttggatatta----gatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttca |
32590195 |
T |
|
| Q |
361 |
gcatctgggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaattaatatgtcattaatttg |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
32590194 |
gcatctgggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaatatatatgtcattaatttg |
32590112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 24883687 - 24883774
Alignment:
| Q |
296 |
agatcctgatatgctcgaagttggaaatggaggaatgacaacagaagaatatcgtgcccatttcagcatctgggcattagctaaggtg |
383 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
24883687 |
agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatatcgtgcccatttcagcatatgggcattagttaaggtg |
24883774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 24883555 - 24883595
Alignment:
| Q |
145 |
aaatgggcatcttatgctggacctggaggatggaatggtaa |
185 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
24883555 |
aaatgggcttcttacgctggacctggaggatggaatggtaa |
24883595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 115 - 418
Target Start/End: Complemental strand, 34578196 - 34577897
Alignment:
| Q |
115 |
agcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaactaacctcactagtaatgttatgca |
214 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34578196 |
agcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatggaatggtaattaattaacctcactagtaatgttatgca |
34578097 |
T |
|
| Q |
215 |
tgttaaacttaagatcattacaagtatatcaaactccaatattaatttctcatatgtgccattaatgttttgatattaattagatcctgatatgctcgaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||| ||| |||||||||||||||||| ||| |
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|
| T |
34578096 |
tgttaaacttaagatcattacaagtacatcaaactccaatattaattcctcgtatgtgtcattaatgtttggat----attagatcctgatatgcttgaa |
34578001 |
T |
|
| Q |
315 |
gttggaaatggaggaatgacaacagaagaatatcgtgcccatttcagcatctgggcattagctaaggtgcatgaaataatttttatatacctattgttga |
414 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||| ||||||||| |
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| T |
34578000 |
gttggaaatggaggcatgaccacagaggaatatcgtgcccatttcagcatttgggcattagctaaggtacatgaaacactttttatatacatattgttga |
34577901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 382
Target Start/End: Complemental strand, 34593856 - 34593767
Alignment:
| Q |
293 |
attagatcctgatatgctcgaagttggaaatggaggaatgacaacagaagaatatcgtgcccatttcagcatctgggcattagctaaggt |
382 |
Q |
| |
|
|||||||||||| ||||| || ||||| |||||||| ||||| ||||||||||||||| | ||||||||||| ||||| ||||||||||| |
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| T |
34593856 |
attagatcctgacatgcttgaggttgggaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt |
34593767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 34593991 - 34593907
Alignment:
| Q |
110 |
tccctagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaactaac |
194 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
34593991 |
tccctagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac |
34593907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 27532378 - 27532418
Alignment:
| Q |
296 |
agatcctgatatgctcgaagttggaaatggaggaatgacaa |
336 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||||| |
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|
| T |
27532378 |
agatcctgatatgcttgaggttggaaatggagggatgacaa |
27532418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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