View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16924_low_1 (Length: 471)

Name: NF16924_low_1
Description: NF16924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16924_low_1
NF16924_low_1
[»] chr2 (18 HSPs)
chr2 (36-466)||(2828205-2828635)
chr2 (34-85)||(14464557-14464608)
chr2 (34-88)||(2893962-2894016)
chr2 (34-81)||(6217309-6217356)
chr2 (34-81)||(15011365-15011412)
chr2 (34-88)||(14229438-14229491)
chr2 (36-79)||(2143959-2144002)
chr2 (34-81)||(29925655-29925702)
chr2 (34-68)||(2828669-2828703)
chr2 (51-85)||(14470585-14470619)
chr2 (51-89)||(38933698-38933736)
chr2 (34-75)||(38933599-38933640)
chr2 (34-89)||(7755334-7755389)
chr2 (52-82)||(45213912-45213942)
chr2 (36-89)||(565308-565360)
chr2 (35-64)||(1992263-1992292)
chr2 (34-75)||(2894048-2894089)
chr2 (51-88)||(16514535-16514572)
[»] chr4 (29 HSPs)
chr4 (34-89)||(50384103-50384158)
chr4 (34-89)||(31430459-31430514)
chr4 (34-89)||(47404583-47404638)
chr4 (34-89)||(40789264-40789319)
chr4 (34-88)||(24006069-24006123)
chr4 (38-85)||(24006151-24006198)
chr4 (34-74)||(40789192-40789232)
chr4 (34-82)||(52028554-52028602)
chr4 (34-82)||(55090001-55090049)
chr4 (34-82)||(55090081-55090129)
chr4 (34-81)||(42375016-42375063)
chr4 (34-81)||(47404670-47404717)
chr4 (34-73)||(52028634-52028673)
chr4 (34-81)||(53954616-53954663)
chr4 (34-88)||(9712845-9712899)
chr4 (39-81)||(31430548-31430590)
chr4 (34-88)||(55089876-55089930)
chr4 (51-88)||(42375121-42375158)
chr4 (51-88)||(53954721-53954758)
chr4 (34-85)||(28693925-28693976)
chr4 (36-75)||(38714835-38714874)
chr4 (52-82)||(25617977-25618007)
chr4 (51-88)||(47661953-47661990)
chr4 (51-88)||(51265556-51265593)
chr4 (41-85)||(19184551-19184595)
chr4 (57-89)||(34176246-34176278)
chr4 (50-90)||(44379918-44379958)
chr4 (34-82)||(45591415-45591463)
chr4 (40-88)||(54716348-54716396)
[»] chr1 (37 HSPs)
chr1 (34-88)||(48823884-48823938)
chr1 (34-89)||(46333944-46333999)
chr1 (34-87)||(28928779-28928832)
chr1 (34-81)||(4609081-4609128)
chr1 (34-85)||(29371370-29371421)
chr1 (34-81)||(49444996-49445043)
chr1 (34-88)||(34062294-34062348)
chr1 (34-75)||(34062221-34062262)
chr1 (34-82)||(37155131-37155180)
chr1 (34-79)||(47303480-47303525)
chr1 (34-89)||(741500-741555)
chr1 (34-85)||(1819491-1819542)
chr1 (34-81)||(8337936-8337983)
chr1 (34-85)||(9157395-9157446)
chr1 (39-74)||(36290428-36290463)
chr1 (34-81)||(38674511-38674558)
chr1 (34-81)||(46334031-46334078)
chr1 (34-88)||(4579168-4579221)
chr1 (38-88)||(48498504-48498553)
chr1 (38-75)||(19711192-19711229)
chr1 (34-75)||(38674588-38674629)
chr1 (51-88)||(48993907-48993944)
chr1 (51-88)||(49444903-49444940)
chr1 (40-88)||(4579263-4579310)
chr1 (51-82)||(9157306-9157337)
chr1 (34-85)||(15220813-15220864)
chr1 (42-85)||(28928864-28928907)
chr1 (34-89)||(48604945-48605000)
chr1 (40-82)||(5694895-5694937)
chr1 (34-88)||(28739418-28739472)
chr1 (51-89)||(29179586-29179624)
chr1 (36-86)||(47303396-47303446)
chr1 (51-88)||(15220922-15220959)
chr1 (35-64)||(44183417-44183446)
chr1 (52-89)||(44183438-44183475)
chr1 (34-86)||(8337853-8337904)
chr1 (34-74)||(32157610-32157650)
[»] chr6 (11 HSPs)
chr6 (34-88)||(31654304-31654358)
chr6 (34-85)||(10521851-10521902)
chr6 (34-94)||(24618686-24618746)
chr6 (34-88)||(551164-551218)
chr6 (51-88)||(24618591-24618628)
chr6 (52-88)||(2315407-2315443)
chr6 (52-88)||(17751014-17751050)
chr6 (36-75)||(10521936-10521975)
chr6 (34-81)||(12343106-12343153)
chr6 (51-88)||(6299164-6299202)
chr6 (51-88)||(6305974-6306012)
[»] chr5 (21 HSPs)
chr5 (38-88)||(26662398-26662448)
chr5 (38-88)||(26933993-26934043)
chr5 (34-88)||(28818916-28818970)
chr5 (34-88)||(3180059-3180113)
chr5 (34-81)||(3899845-3899892)
chr5 (34-79)||(16439223-16439268)
chr5 (34-89)||(6912295-6912350)
chr5 (34-81)||(16971150-16971197)
chr5 (51-89)||(2356382-2356420)
chr5 (39-81)||(2953204-2953246)
chr5 (51-89)||(16971255-16971293)
chr5 (34-84)||(38134458-38134508)
chr5 (51-88)||(2953301-2953338)
chr5 (36-88)||(19598418-19598470)
chr5 (38-89)||(16802442-16802493)
chr5 (51-88)||(291208-291245)
chr5 (51-88)||(2093927-2093964)
chr5 (41-82)||(6912355-6912396)
chr5 (51-88)||(12913793-12913830)
chr5 (51-87)||(3899950-3899986)
chr5 (51-79)||(12913914-12913942)
[»] chr3 (21 HSPs)
chr3 (34-88)||(33689261-33689315)
chr3 (34-88)||(49414508-49414562)
chr3 (34-85)||(47677340-47677391)
chr3 (36-88)||(43139708-43139760)
chr3 (34-81)||(1801580-1801627)
chr3 (34-85)||(30476476-30476527)
chr3 (36-87)||(49418691-49418742)
chr3 (38-74)||(39385777-39385813)
chr3 (34-82)||(47677260-47677308)
chr3 (34-85)||(29031799-29031850)
chr3 (51-88)||(1272560-1272597)
chr3 (51-88)||(45103099-45103136)
chr3 (34-74)||(18321736-18321776)
chr3 (34-85)||(1272495-1272546)
chr3 (34-69)||(1801531-1801566)
chr3 (34-88)||(11512386-11512440)
chr3 (52-82)||(33689172-33689202)
chr3 (51-85)||(55223225-55223259)
chr3 (51-88)||(1801436-1801473)
chr3 (51-88)||(30734513-30734550)
chr3 (34-74)||(29031727-29031767)
[»] chr7 (18 HSPs)
chr7 (37-89)||(41018226-41018278)
chr7 (34-85)||(27028795-27028846)
chr7 (34-81)||(29053399-29053446)
chr7 (36-81)||(30165334-30165379)
chr7 (34-87)||(34854695-34854748)
chr7 (39-88)||(45231853-45231902)
chr7 (51-89)||(11016980-11017018)
chr7 (35-84)||(4649408-4649457)
chr7 (39-88)||(29053313-29053362)
chr7 (34-75)||(42628307-42628348)
chr7 (51-88)||(42628406-42628443)
chr7 (39-75)||(4649332-4649368)
chr7 (51-89)||(4290656-4290694)
chr7 (34-88)||(10419543-10419597)
chr7 (35-85)||(25001349-25001399)
chr7 (34-87)||(7211860-7211913)
chr7 (34-91)||(11271507-11271564)
chr7 (34-87)||(17272699-17272752)
[»] chr8 (13 HSPs)
chr8 (36-89)||(6296603-6296656)
chr8 (34-87)||(34229726-34229779)
chr8 (34-89)||(34541801-34541856)
chr8 (34-88)||(1880323-1880376)
chr8 (51-89)||(5033272-5033310)
chr8 (34-88)||(8243387-8243441)
chr8 (51-89)||(33841580-33841618)
chr8 (53-85)||(34229634-34229666)
chr8 (34-70)||(39850972-39851008)
chr8 (51-89)||(5667086-5667124)
chr8 (51-89)||(35440958-35440996)
chr8 (34-80)||(37618735-37618780)
chr8 (34-87)||(39139846-39139899)
[»] scaffold0047 (2 HSPs)
scaffold0047 (34-81)||(63763-63810)
scaffold0047 (34-75)||(63842-63883)
[»] scaffold1033 (1 HSPs)
scaffold1033 (34-85)||(2298-2349)
[»] scaffold1029 (1 HSPs)
scaffold1029 (34-85)||(2298-2349)
[»] scaffold0481 (1 HSPs)
scaffold0481 (34-75)||(2899-2940)
[»] scaffold0016 (2 HSPs)
scaffold0016 (52-89)||(49692-49729)
scaffold0016 (34-75)||(49788-49829)
[»] scaffold0180 (1 HSPs)
scaffold0180 (52-85)||(19115-19148)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 36 - 466
Target Start/End: Complemental strand, 2828635 - 2828205
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccgcattttagagggtcggtgctacgcaacgctatctcagattaacaac 135  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828635 tgacattgtgattggccaatgtcacccaactctatgtcacagaagtgctacccgcattttagagggtcggtgctacgcaacgctatctcagattaacaac 2828536  T
Q  136 atggcttggcatattgtagtatgagagttacagcctctttcaactgtgatcatttagtttttcacataacttacaaatagttcctgttgagatgtccttt 235  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828535 atggcttggcatgttgtagtatgagagttacaacctctttctactttgatcatttagtttttcacataacttacaaatagttcctgttgagatgtccttt 2828436  T
Q  236 actnnnnnnnnnttgatttaggagactcttaagccgtttaagccgttatcccatatgctgcaacacgtatttcatatagatttaagttccaaattttcaa 335  Q
    |||         ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2828435 actaaaaaaaaattgatttaggagactcttaagccgtttaagccgttatcccatatgctgcaacatgtatttcatatagatttaagttccaaattttcaa 2828336  T
Q  336 acggttacatacttttcttatgatatcgctatttatagttagatagaaatattggaagcacagaattattctgatacatgcttaaattcaaatcttacat 435  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  2828335 acggttacatacttttcttatgatatctctatttatagttagatagaaatattggaagcacagaattattccgatacatgcttaaattaaaatcttacat 2828236  T
Q  436 ttacatacaccgattatttgtttcatctcag 466  Q
    |||||||||||||||||||||||||| ||||    
T  2828235 ttacatacaccgattatttgtttcatttcag 2828205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 14464608 - 14464557
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  14464608 tgtgacattgtgattgaccaatgtcactcaactctatgtcacacaagtgcta 14464557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 2894016 - 2893962
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||    
T  2894016 tgtgagattgtgattggccaatgtcacccaactctatgtcacccaagtgttaccc 2893962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 6217309 - 6217356
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  6217309 tgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 6217356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 15011365 - 15011412
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||    
T  15011365 tgtgacattgtgattggccaatgtcactcaactctatgtcacccaagt 15011412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 14229438 - 14229491
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  14229438 tgtgacattgtgattg-ccaatgtcatccaactctatgtcacccaagtgctaccc 14229491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 2143959 - 2144002
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcacacaa 79  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  2143959 tgacattgtgattggccaacgtcactcaactctatgtcacacaa 2144002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 29925655 - 29925702
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||    
T  29925655 tgtggcattgtgattggccaatgtcacccaactctatgttacccaagt 29925702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 2828669 - 2828703
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactct 68  Q
    |||||||||||||||||||||||||||||||||||    
T  2828669 tgtgacattgtgattggccaatgtcacccaactct 2828703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 14470619 - 14470585
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    |||||||||||||||||||||||||||||||||||    
T  14470619 ccaatgtcacccaactctatgtcacacaagtgcta 14470585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 38933698 - 38933736
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  38933698 ccaatgtcacccaactctatgtcacccaagtgctacccg 38933736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 38933640 - 38933599
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  38933640 tgtggcattgtgattggtcaatgtcacccaactctatgtcac 38933599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 7755389 - 7755334
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||| ||||||||||||||| | | | ||||||| |||||||||||||    
T  7755389 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctacccg 7755334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 82
Target Start/End: Original strand, 45213912 - 45213942
Alignment:
Q  52 caatgtcacccaactctatgtcacacaagtg 82  Q
    |||||||||||||||||||||||||||||||    
T  45213912 caatgtcacccaactctatgtcacacaagtg 45213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 565360 - 565308
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||||||||||||||| |||| | |||||||| ||||| |||||||    
T  565360 tgacattgtgattggccaatgtca-ccaattatatgtcacccaagttctacccg 565308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 1992263 - 1992292
Alignment:
Q  35 gtgacattgtgattggccaatgtcacccaa 64  Q
    ||||||||||||||||||||||||||||||    
T  1992263 gtgacattgtgattggccaatgtcacccaa 1992292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 2894048 - 2894089
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    ||||||| |||||||| ||||||||| |||||||||||||||    
T  2894048 tgtgacactgtgattgaccaatgtcatccaactctatgtcac 2894089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 16514535 - 16514572
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  16514535 ccaatctcacccaactctatgtcacccaagtgctaccc 16514572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 50384158 - 50384103
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50384158 tgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctacccg 50384103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 31430514 - 31430459
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  31430514 tgtgacattgtgattggtcaatgtcacccaactctatgtcacccaagtgctacccg 31430459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 47404638 - 47404583
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  47404638 tgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctacccg 47404583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 40789264 - 40789319
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  40789264 tgtgacattgtgattggccaatatcaccaaactctatgtcacccaagtgctacccg 40789319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 24006123 - 24006069
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  24006123 tgtgtcattgtgattggccaatgtcacccaactgtatgtcacccaagtgctaccc 24006069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 24006151 - 24006198
Alignment:
Q  38 acattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  24006151 acattgtgattggtcaatgtcacccaactctatgtcacccaagtgcta 24006198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 40789232 - 40789192
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtca 74  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  40789232 tgtgacattgtgattggccaatgtcaccaaactctatgtca 40789192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 52028602 - 52028554
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 82  Q
    |||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  52028602 tgtgacatcgtgattggccaatatcacccaactctatgtcacccaagtg 52028554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 55090049 - 55090001
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 82  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  55090049 tgtgacattgtgattgaccaatgtcactcaactctatgtcacccaagtg 55090001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 55090081 - 55090129
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 82  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  55090081 tgtgacattgtgattgaccaatgtcactcaactctatgtcacccaagtg 55090129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 42375063 - 42375016
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  42375063 tgtggcattgtgattgaccaatgtcacccaactctatgtcacccaagt 42375016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 47404670 - 47404717
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  47404670 tgtggcattgtgattgaccaatgtcacccaactctatgtcacccaagt 47404717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 52028634 - 52028673
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtc 73  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  52028634 tgtgacattgtgattggccaatgtcacccaattctatgtc 52028673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 53954663 - 53954616
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  53954663 tgtgacattgtgattggccaatgtcacccaactttatatcacccaagt 53954616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 9712899 - 9712845
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||| |||||||||||||||||| ||  ||||||||| ||||||||||||    
T  9712899 tgtgacattctgattggccaatgtcaccaaatgctatgtcacccaagtgctaccc 9712845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 31430548 - 31430590
Alignment:
Q  39 cattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  31430548 cattgtaattggccaatgtcacccaactctatgtcacccaagt 31430590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 55089930 - 55089876
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||||| |||||||||| ||||||||||||||  || ||||||||    
T  55089930 tgtgacattgtgattgaccaatgtcactcaactctatgtcacctaaatgctaccc 55089876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 42375121 - 42375158
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  42375121 ccaatgtcacccaactctatgtcacccaagtgctaccc 42375158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 53954721 - 53954758
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||||||||||||||| |||||||||||    
T  53954721 ccaatgtcacccaactctatgtcacaaaagtgctaccc 53954758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 28693976 - 28693925
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||| ||||||||||| |||||||| |||||| |||||||| |||||||||    
T  28693976 tgtgatattgtgattggtcaatgtcatccaactttatgtcacccaagtgcta 28693925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 38714874 - 38714835
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  38714874 tgacattgtgattggccaatatcacctaactctatgtcac 38714835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 82
Target Start/End: Complemental strand, 25618007 - 25617977
Alignment:
Q  52 caatgtcacccaactctatgtcacacaagtg 82  Q
    |||||||||||||||||||||||||||||||    
T  25618007 caatgtcacccaactctatgtcacacaagtg 25617977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 47661953 - 47661990
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  47661953 ccaatgtcacccaactctatgtcacccaaatgctaccc 47661990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 51265556 - 51265593
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  51265556 ccaatgtcacccaactctaagtcacccaagtgctaccc 51265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 19184551 - 19184595
Alignment:
Q  41 ttgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||||| |||||||||||||||| || ||||| |||||||||    
T  19184551 ttgtgattgaccaatgtcacccaactttacgtcacccaagtgcta 19184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 34176246 - 34176278
Alignment:
Q  57 tcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||| |||||||||||||    
T  34176246 tcacccaactctatgtcactcaagtgctacccg 34176278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 44379958 - 44379918
Alignment:
Q  50 gccaatgtcacccaactctatgtcacacaagtgctacccgc 90  Q
    ||||||||||| |||||||||||||  ||||||||||||||    
T  44379958 gccaatgtcactcaactctatgtcatccaagtgctacccgc 44379918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 45591463 - 45591415
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 82  Q
    ||||||||| |||||| | |||| ||||||||||||| |||||||||||    
T  45591463 tgtgacattatgattgacgaatgccacccaactctatatcacacaagtg 45591415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 54716396 - 54716348
Alignment:
Q  40 attgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||  |||||||||||||||||||||||| ||| | ||||||    
T  54716396 attgtgattgatcaatgtcacccaactctatgtcactcaaatactaccc 54716348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 48823938 - 48823884
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48823938 tgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctaccc 48823884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 46333999 - 46333944
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  46333999 tgtgacattgtgattggccaatgtcatccaactctatgtcacccaagtgctacccg 46333944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 28928832 - 28928779
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 87  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  28928832 tgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgctacc 28928779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 4609081 - 4609128
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  4609081 tgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 4609128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 29371421 - 29371370
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  29371421 tgtgacattgtgattggccaatgtcacctaactctatgtcacccaaatgcta 29371370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 49444996 - 49445043
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  49444996 tgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 49445043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 34062294 - 34062348
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  34062294 tgtgacattgtgattggtcaatgtcacccaactctatgttacccaaatgctaccc 34062348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 34062262 - 34062221
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  34062262 tgtggcattgtgattggccaatgtcacccaactctatgtcac 34062221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 37155131 - 37155180
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactcta-tgtcacacaagtg 82  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  37155131 tgtgacattgtgattggccaatgtcacccaactctattgtcacccaagtg 37155180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 47303480 - 47303525
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaa 79  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  47303480 tgtgacattgtgattgaccaatgtcacctaactctatgtcacacaa 47303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 741555 - 741500
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||| |||||||||| || ||||| |||| |||||||||||||    
T  741555 tgtgacattgtgattgggcaatgtcacctaattctatatcacgcaagtgctacccg 741500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 1819542 - 1819491
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||||||||||||  |||||||||||||||||||||||  |||||||||    
T  1819542 tgtgacattgtgattgatcaatgtcacccaactctatgtcattcaagtgcta 1819491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 8337936 - 8337983
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| |||||||||||| |||||||||||||||||||||||| |||||    
T  8337936 tgtggcattgtgattggtcaatgtcacccaactctatgtcacccaagt 8337983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 9157395 - 9157446
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||| ||||||||||  |||||||| |||||||||||||||||||||||||    
T  9157395 tgtgatattgtgattgatcaatgtcaaccaactctatgtcacacaagtgcta 9157446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 36290463 - 36290428
Alignment:
Q  39 cattgtgattggccaatgtcacccaactctatgtca 74  Q
    ||||||||||||||||||||||||||||||||||||    
T  36290463 cattgtgattggccaatgtcacccaactctatgtca 36290428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 38674558 - 38674511
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  38674558 tgtgacattgtgattggccaatatcacccaactccatgtcacccaagt 38674511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 46334031 - 46334078
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  46334031 tgtgacattgtgattggtcaatgtcatccaactctatgtcacccaagt 46334078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 4579221 - 4579168
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||    
T  4579221 tgtgacattgtggttggccaatgtca-ccaattctatgtcacccaagtgctaccc 4579168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 48498504 - 48498553
Alignment:
Q  38 acattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  48498504 acattgtgattggtcaatgtcacc-aactctatgtcacccaagtgctaccc 48498553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 19711229 - 19711192
Alignment:
Q  38 acattgtgattggccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  19711229 acattgtgattggtcaatgtcacccaactctatgtcac 19711192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 38674588 - 38674629
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  38674588 tgtgacattatgattggccaatatcacccaactctatgtcac 38674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 48993944 - 48993907
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  48993944 ccaatgtcacccaactctatgtcacccaagtgctaccc 48993907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 49444940 - 49444903
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  49444940 ccaatgtcacccaactctatgtcacccaagtgctaccc 49444903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 4579263 - 4579310
Alignment:
Q  40 attgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  4579263 attgtgattggccaatgtca-ccaattctatgtcacccaagtgctaccc 4579310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 82
Target Start/End: Complemental strand, 9157337 - 9157306
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtg 82  Q
    ||||||||||||||||||||||||||||||||    
T  9157337 ccaatgtcacccaactctatgtcacacaagtg 9157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 15220864 - 15220813
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||| || ||||||| ||||||||||||||||| ||||||| |||||||||    
T  15220864 tgtgagatcgtgattgaccaatgtcacccaactccatgtcacccaagtgcta 15220813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 28928864 - 28928907
Alignment:
Q  42 tgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  28928864 tgtgattggccaatgtcaccaaactctatatcactcaagtgcta 28928907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 48605000 - 48604945
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||||||| ||||||||||| |||||||| |||  ||| |||||||||    
T  48605000 tgtgacattgtgattgaccaatgtcacctaactctatatcatccaaatgctacccg 48604945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 5694937 - 5694895
Alignment:
Q  40 attgtgattggccaatgtcacccaactctatgtcacacaagtg 82  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||    
T  5694937 attgtgattgaccaatgtcaccaaactctatgtcactcaagtg 5694895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 28739418 - 28739472
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||| ||||||||||||||| | | | ||||||| ||||||||||||    
T  28739418 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctaccc 28739472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 29179624 - 29179586
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  29179624 ccaatgtcacccaactctatgtcatccaagtgctacccg 29179586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 47303446 - 47303396
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctac 86  Q
    ||||||||||||||| |||| ||||| |||||||| |||| ||||||||||    
T  47303446 tgacattgtgattggtcaatatcacctaactctatatcactcaagtgctac 47303396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 15220922 - 15220959
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  15220922 ccaatgtcacccaactctatgtcacccaaatgctaccc 15220959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 44183446 - 44183417
Alignment:
Q  35 gtgacattgtgattggccaatgtcacccaa 64  Q
    ||||||||||||||||||||||||||||||    
T  44183446 gtgacattgtgattggccaatgtcacccaa 44183417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 44183438 - 44183475
Alignment:
Q  52 caatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  44183438 caatgtcacctaactctatgtcacccaagtgctacccg 44183475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 8337904 - 8337853
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctac 86  Q
    |||||||||||||||| ||||||||| |||||||||| ||||  |||||||||    
T  8337904 tgtgacattgtgattgaccaatgtca-ccaactctatatcacctaagtgctac 8337853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 32157610 - 32157650
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtca 74  Q
    ||||||| |||||||| ||||||||||| ||||||||||||    
T  32157610 tgtgacactgtgattgaccaatgtcaccaaactctatgtca 32157650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 31654358 - 31654304
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  31654358 tgtgacattgtgattggccaatgtcacccaactctatatcacccaagtgctaccc 31654304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 10521902 - 10521851
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10521902 tgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgcta 10521851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 24618686 - 24618746
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccgcattt 94  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||||||||| || |||||    
T  24618686 tgtgacattgtgattggtcaacgtcacccaactctatgtcacccaagtgctatccacattt 24618746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 551218 - 551164
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||| ||||||||||| ||||||||||||||||||||| ||| |||||| |||||    
T  551218 tgtggcattgtgattgaccaatgtcacccaactctatgccacccaagtgttaccc 551164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 24618628 - 24618591
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  24618628 ccaatgtcacccaactctatgtcactcaagtgctaccc 24618591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 2315407 - 2315443
Alignment:
Q  52 caatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||| ||||||||||||||||||||||||||    
T  2315407 caatgtcacctaactctatgtcacacaagtgctaccc 2315443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 17751014 - 17751050
Alignment:
Q  52 caatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||| ||||||||||||||||||||||||||||||||    
T  17751014 caatatcacccaactctatgtcacacaagtgctaccc 17751050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 10521936 - 10521975
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  10521936 tgacattgtgattgaccaatgtcactcaactctatgtcac 10521975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 12343153 - 12343106
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| ||||||||||| | ||||||||||||||||||||||| |||||    
T  12343153 tgtggcattgtgattgactaatgtcacccaactctatgtcacccaagt 12343106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 6299202 - 6299164
Alignment:
Q  51 ccaatgtcacccaactct-atgtcacacaagtgctaccc 88  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  6299202 ccaatgtcacccaactcttatgtcacacaagtgctaccc 6299164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 6306012 - 6305974
Alignment:
Q  51 ccaatgtcacccaactct-atgtcacacaagtgctaccc 88  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  6306012 ccaatgtcacccaactcttatgtcacacaagtgctaccc 6305974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 26662448 - 26662398
Alignment:
Q  38 acattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26662448 acattgtgattggtcaatgtcacccaactctatgtcacacaagtgctaccc 26662398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 26934043 - 26933993
Alignment:
Q  38 acattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26934043 acattgtgattggtcaatgtcacccaactctatgtcacacaagtgctaccc 26933993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 28818970 - 28818916
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  28818970 tgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctaccc 28818916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 3180113 - 3180059
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  3180113 tgtgacattatgattgatcaatgtcacccaactctatgtcacacaagtgctaccc 3180059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 3899892 - 3899845
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  3899892 tgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 3899845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 16439223 - 16439268
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaa 79  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  16439223 tgtgacattgtgattgatcaatgtcacccaactctatgtcacacaa 16439268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 6912350 - 6912295
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||||||| | ||||||| | |||||||||||| ||||||||||||||    
T  6912350 tgtgacattgtgattgactaatgtcaactaactctatgtcatacaagtgctacccg 6912295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 16971197 - 16971150
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||||    
T  16971197 tgtggcattgtgattggccaatgtcacccaagtctatgtcacccaagt 16971150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 2356382 - 2356420
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  2356382 ccaatgtcatccaactctatgtcacacaagtgctacccg 2356420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 2953246 - 2953204
Alignment:
Q  39 cattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  2953246 cattgtgattgaccaatgtcacccaactctatgtcacccaagt 2953204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 16971255 - 16971293
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  16971255 ccaatgtcacccaactctatgtcacccaagtgctacccg 16971293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 38134458 - 38134508
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgct 84  Q
    |||||||||||||||||||||| ||| ||||||||||||| | ||||||||    
T  38134458 tgtgacattgtgattggccaatatcatccaactctatgtcgcccaagtgct 38134508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 2953301 - 2953338
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  2953301 ccaatgtcacccaactctatgtcacccaagtgctaccc 2953338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 19598418 - 19598470
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||| |||||||  ||||||||||||||||||||||| |||||| |||||    
T  19598418 tgacattatgattggttaatgtcacccaactctatgtcacccaagtgttaccc 19598470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 16802493 - 16802442
Alignment:
Q  38 acattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||||||||||| | ||||| ||  ||||||||||||    
T  16802493 acattgtgattggccaatgtcacccaaatttatgttacctaagtgctacccg 16802442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 291208 - 291245
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  291208 ccaatgtcacccaactctatatcacccaagtgctaccc 291245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 2093964 - 2093927
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  2093964 ccaatatcacccaactctatgtcacccaagtgctaccc 2093927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 6912355 - 6912396
Alignment:
Q  41 ttgtgattggccaatgtcacccaactctatgtcacacaagtg 82  Q
    |||||||||| |||||||||| |||||||||||||| |||||    
T  6912355 ttgtgattggtcaatgtcaccaaactctatgtcacataagtg 6912396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 12913830 - 12913793
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  12913830 ccaatgtcactcaactatatgtcacacaagtgctaccc 12913793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 3899950 - 3899986
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacc 87  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  3899950 ccaatgtcacccaactctaagtcacccaagtgctacc 3899986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 12913914 - 12913942
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaa 79  Q
    |||||||||||||||||||||||||||||    
T  12913914 ccaatgtcacccaactctatgtcacacaa 12913942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 33689261 - 33689315
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  33689261 tgtgacattgtgattggccaatgtcacccaactcaatgtcacccaagtgctaccc 33689315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 49414508 - 49414562
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  49414508 tgtgacattgtaattggccaatgtcacccaactctatgtcacccaagtgctaccc 49414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 47677340 - 47677391
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  47677340 tgtgacattgtgattgatcaatgtcacccaactctatgtcacacaagtgcta 47677391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 43139760 - 43139708
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||||||||    
T  43139760 tgacattgtgattgaccgatgtcacccaactctatgtcactcaagtgctaccc 43139708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 1801580 - 1801627
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1801580 tgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 1801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 30476527 - 30476476
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  30476527 tgtgacattgtgattggccaatgtcacctagctctctgtcacacaagtgcta 30476476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 49418742 - 49418691
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 87  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  49418742 tgacattgtgattgaccaatatcacccaactctatgtcacccaagtgctacc 49418691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 39385777 - 39385813
Alignment:
Q  38 acattgtgattggccaatgtcacccaactctatgtca 74  Q
    |||||||||||||||||||||||||||||||||||||    
T  39385777 acattgtgattggccaatgtcacccaactctatgtca 39385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 47677308 - 47677260
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 82  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||    
T  47677308 tgtgacattgtgatcggtcaatgtcaccaaactctatgtcacacaagtg 47677260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 29031799 - 29031850
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||||||| |||| ||||| ||||| |||||||||||||||||||||||    
T  29031799 tgtgacattgtaattgaccaatatcacctaactctatgtcacacaagtgcta 29031850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 1272560 - 1272597
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  1272560 ccaatgtcacccaactctatgtcacccaagtgctaccc 1272597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 45103136 - 45103099
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45103136 ccaatgtcacccaactctatgtcacccaagtgctaccc 45103099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 18321736 - 18321776
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtca 74  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  18321736 tgtgacattgtgattgaccaatgtcatccaactctatgtca 18321776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 1272546 - 1272495
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||| | |||||||||||||||||| |||||||||||||  ||||||||    
T  1272546 tgtgacaatttgattggccaatgtcaccaaactctatgtcacctaagtgcta 1272495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 1801531 - 1801566
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactcta 69  Q
    |||| |||||||||||||||||||||||||||||||    
T  1801531 tgtggcattgtgattggccaatgtcacccaactcta 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 11512440 - 11512386
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||| ||||||||||||||| | | | ||||||| ||||||||||||    
T  11512440 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctaccc 11512386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 82
Target Start/End: Complemental strand, 33689202 - 33689172
Alignment:
Q  52 caatgtcacccaactctatgtcacacaagtg 82  Q
    |||||||||||||||||||||||||||||||    
T  33689202 caatgtcacccaactctatgtcacacaagtg 33689172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 55223259 - 55223225
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||||||| |||||||||||||||||||||||    
T  55223259 ccaatgtcacctaactctatgtcacacaagtgcta 55223225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 1801473 - 1801436
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  1801473 ccaatgtcacccaactctatgtcacccaagtgttaccc 1801436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 30734513 - 30734550
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  30734513 ccaatgtcacctaactctatgtcacccaagtgctaccc 30734550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 29031767 - 29031727
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtca 74  Q
    |||||||||||||||| ||||| ||||| ||||||||||||    
T  29031767 tgtgacattgtgattgaccaatatcacctaactctatgtca 29031727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 41018278 - 41018226
Alignment:
Q  37 gacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  41018278 gacattgtgattggccaatgtcacccaactctatgtcatccaagtgctacccg 41018226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 27028846 - 27028795
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    |||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  27028846 tgtgacattgtgattgtccaatgttacccaactctatgtcacccaagtgcta 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 29053399 - 29053446
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  29053399 tgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 29053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 30165334 - 30165379
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||    
T  30165334 tgacattgtgattgaccaatgtcacccaactctatatcacacaagt 30165379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 34854748 - 34854695
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 87  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  34854748 tgtggcattgtgattggccaatgtcaccaaactctatgtcacccaagtgttacc 34854695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 45231902 - 45231853
Alignment:
Q  39 cattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  45231902 cattgtgattggtcaatgtcacccaactctatgtcacccaagtgttaccc 45231853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 11016980 - 11017018
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  11016980 ccaatgtcacccaactctatgtcacccaagtgctacccg 11017018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 4649408 - 4649457
Alignment:
Q  35 gtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgct 84  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  4649408 gtgacattgtgattgaccaatgtcaccaaactctatgtcactcaattgct 4649457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 29053362 - 29053313
Alignment:
Q  39 cattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||| ||||||||||||| ||| || |||||    
T  29053362 cattgtgattggccaatgtcaccaaactctatgtcacccaaatgttaccc 29053313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 42628348 - 42628307
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  42628348 tgtggcattgtgattggtcaatgtcacccaactctatgtcac 42628307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 42628406 - 42628443
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  42628406 ccaatgtcacccaactctatgtcacccaagtgctaccc 42628443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 4649368 - 4649332
Alignment:
Q  39 cattgtgattggccaatgtcacccaactctatgtcac 75  Q
    ||||||||||| |||||||||||||||||||||||||    
T  4649368 cattgtgattgaccaatgtcacccaactctatgtcac 4649332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 4290656 - 4290694
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  4290656 ccaatgtcacccaactgtatgtcacccaagtgctacccg 4290694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 10419543 - 10419597
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    ||||||||||||||  |||||||||||| |||||||||| || |||||| |||||    
T  10419543 tgtgacattgtgatcagccaatgtcaccaaactctatgttacccaagtgttaccc 10419597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 25001399 - 25001349
Alignment:
Q  35 gtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||||||||||| ||||||||||| |||||||| |||| ||| |||||    
T  25001399 gtgacattgtgattgtccaatgtcaccaaactctatttcacccaaatgcta 25001349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 7211913 - 7211860
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 87  Q
    |||||||||||| ||||||||||||||| | | | ||||||| |||||||||||    
T  7211913 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctacc 7211860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 11271564 - 11271507
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccgca 91  Q
    |||||||||||| ||||||||||| ||| |   ||||||||| |||||||||||||||    
T  11271564 tgtgacattgtggttggccaatgttaccaagtgctatgtcactcaagtgctacccgca 11271507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 17272752 - 17272699
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 87  Q
    |||||||||||| ||||||||||||||| | | | ||||||| |||||||||||    
T  17272752 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctacc 17272699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 6296656 - 6296603
Alignment:
Q  36 tgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  6296656 tgacattgtgattggtcaatgtcacccaactctatgtcatccaagtgctacccg 6296603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 34229726 - 34229779
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 87  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  34229726 tgtgatattgtgattgaccaatgtcacctaactctatgtcacacaagtgctacc 34229779  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 34541856 - 34541801
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  34541856 tgtgatattatgattggccaatgtcacccaactttatgtcacccaagtgctacccg 34541801  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 1880323 - 1880376
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||    
T  1880323 tgtgacattgtgattgaccaatgtca-ccaattctatgtcacccaagtgctaccc 1880376  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 5033272 - 5033310
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  5033272 ccaatgtcacccaactctatgtcacccaagtgctacccg 5033310  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 8243441 - 8243387
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 88  Q
    |||| |||||||||||  ||||||||| |||||||||||||| ||||||||||||    
T  8243441 tgtggcattgtgattgatcaatgtcactcaactctatgtcacccaagtgctaccc 8243387  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 33841618 - 33841580
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  33841618 ccaatgtcacccaactctatgtcacccaagtgctacccg 33841580  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 34229666 - 34229634
Alignment:
Q  53 aatgtcacccaactctatgtcacacaagtgcta 85  Q
    |||||||||||||||||||||||||||||||||    
T  34229666 aatgtcacccaactctatgtcacacaagtgcta 34229634  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 39851008 - 39850972
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctat 70  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39851008 tgtggcattgtgattggccaatgtcacccaactctat 39850972  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 5667124 - 5667086
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  5667124 ccaatgtcatccaactctatgtcacccaagtgctacccg 5667086  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 35440996 - 35440958
Alignment:
Q  51 ccaatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  35440996 ccaatgtcacccaactctaagtcacccaagtgctacccg 35440958  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 37618780 - 37618735
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaag 80  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||    
T  37618780 tgtgacattgtgattggccaatgtca-ccaattctatgtcacccaag 37618735  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 39139846 - 39139899
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 87  Q
    |||||||||||||||| ||||||||||| ||  ||||||||| ||| |||||||    
T  39139846 tgtgacattgtgattgaccaatgtcaccaaatactatgtcacccaaatgctacc 39139899  T

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Target: scaffold0047 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 63810 - 63763
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 81  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  63810 tgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 63763  T

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Target: scaffold0047; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 63842 - 63883
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  63842 tgtgacattgtgattggccaatgtcacccaactctatatcac 63883  T

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Target: scaffold1033 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 2298 - 2349
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  2298 tgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgcta 2349  T

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Target: scaffold1029 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 2298 - 2349
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 85  Q
    ||||||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  2298 tgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgcta 2349  T

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Target: scaffold0481 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 2940 - 2899
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  2940 tgtgacattgtgattggtcaatatcacccaactctatgtcac 2899  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 49729 - 49692
Alignment:
Q  52 caatgtcacccaactctatgtcacacaagtgctacccg 89  Q
    |||||||||||||||||||||||| |||||||||||||    
T  49729 caatgtcacccaactctatgtcacccaagtgctacccg 49692  T

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Target: scaffold0016; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 49788 - 49829
Alignment:
Q  34 tgtgacattgtgattggccaatgtcacccaactctatgtcac 75  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  49788 tgtggcattgtgattggccaatgtcacctaactctatgtcac 49829  T

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Target: scaffold0180 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 19148 - 19115
Alignment:
Q  52 caatgtcacccaactctatgtcacacaagtgcta 85  Q
    |||||||||||||||||||||||||||| |||||    
T  19148 caatgtcacccaactctatgtcacacaaatgcta 19115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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