View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16924_low_2 (Length: 292)
Name: NF16924_low_2
Description: NF16924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16924_low_2 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 30427 - 30674
Alignment:
| Q |
29 |
gaaacaatagtcactttgatagtggaaatggtttcgccttcacaaatagcgctttctaattatgtaattttttcttatcttatcatctctaattagcttc |
128 |
Q |
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| T |
30427 |
gaaacaacagtcactttcatagtggaaatgatttcaccttcacaaatagcgctttctaattatgtacttttttcttatcttatcatctctaattagcttc |
30526 |
T |
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| Q |
129 |
cattgaattacataacgccataaaggtgttagctta--gtgataagagtttaacgacaaagttctctcagggtcggctgtaaaatagtcattagtgtttt |
226 |
Q |
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| T |
30527 |
cattgaattacataatgccat-aaggtgttagcttaacgtcataa-cctcaagagataaagttctctcagggtcgattgtaaaatagtcattagtgtttt |
30624 |
T |
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| Q |
227 |
tctactaataatagttatgactagtttatgctgaaatatctatttattggt |
277 |
Q |
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| T |
30625 |
tttactaataatagttatgactag-ttatgctgaaatatctatttattggt |
30674 |
T |
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Target: scaffold0024; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 65637 - 65704
Alignment:
| Q |
9 |
agcataggtatcatggttatgaaacaatagtcactttgatagtggaaatggtttcgccttcacaaata |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65637 |
agcataggtatcatggttatgaaacaatagtcactttgatagtggaaatggtttcgccttcacaaata |
65704 |
T |
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