View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16925_high_1 (Length: 497)
Name: NF16925_high_1
Description: NF16925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16925_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 40998499 - 40998026
Alignment:
| Q |
18 |
tttttcgtccatacaaatatgatgaatttgagtcttggatggattgcttggctcttggcccttgggtcaacttaagttttcaaaatgtgtca---cttcc |
114 |
Q |
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| T |
40998499 |
tttttggtccttacaaatatgatgagtttgagtcttggatggattgcttggctcttggcccttgggtcaacttaagttttcaaaatgtgtcatcacctcc |
40998400 |
T |
|
| Q |
115 |
gtaaaattgaattagcttgccaaacacttgattatgggagttttcaaatggggacggcgagggttgagagtgggggaagagagttgtttgccatggtgtg |
214 |
Q |
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|||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40998399 |
gtaaaattgaattagcataccaaacacttaattatgggagttttcaaatggggacggcgagggttgagagtgggggaagagagttgtttgccatggtgtg |
40998300 |
T |
|
| Q |
215 |
tttgaatcacgataaatagacaatagcaaggtaatgaaaataagatcgaattgatcaatctaagtgatgatatgtctatgcatttagtagaattgttaaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40998299 |
tttgaatcacgataaatagacaatagcaaggtaataaaaataagatcgaattgatcaatctaagtgatgatctgtctatgcatttagtagaattgttaaa |
40998200 |
T |
|
| Q |
315 |
actatagaggtaataaaagtaactttttctacataaatagacgatagcaaggtaacaaaagaac-tgag-aaaaaccaaactaaaatcgtttaaaccagt |
412 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
40998199 |
actatagaggtaataaaaataactttttctacataaatagacgatagcaaggtaacaaaagaacttgagaaaaaaccaaactaaaatcgtttaaaccagt |
40998100 |
T |
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| Q |
413 |
aaaaatccaggattgagctagttaagtaagttggaccgaattttgtaaatgttgcaccgacacattgtgatgat |
486 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40998099 |
caaaatccacgattgagctagttaagtaagttggaccgaattttgtaaatgttgcacctacacattgtgatgat |
40998026 |
T |
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