View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16925_low_10 (Length: 235)
Name: NF16925_low_10
Description: NF16925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16925_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37719005 - 37719224
Alignment:
| Q |
1 |
aaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37719005 |
aaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttt |
37719104 |
T |
|
| Q |
101 |
ataatgaaaacctagaataagaccggaagtaataaattttatagtgataatctacatcagctttgaataaattgcttcttgattcagacagctcctgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37719105 |
ataatgaaaacctagaataagaccggaagtaataaattttatagtgataatctacatcagctttgaataaattgcttcctgattcagacagctcctgcaa |
37719204 |
T |
|
| Q |
201 |
acatcctttaattttactat |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
37719205 |
acatcctttaattttactat |
37719224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 30440426 - 30440564
Alignment:
| Q |
3 |
aatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaattttat |
102 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
30440426 |
aatttgtatacgatcactctatcagacacaaatcagatcgaaattataac-tcaacatcaacaaaatctacaccagaatcaagattatcaccaatgttat |
30440524 |
T |
|
| Q |
103 |
aatgaaaacctagaataagaccggaagtaataaattttat |
142 |
Q |
| |
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| ||||||||||||| |||||| || ||||||| |||||| |
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| T |
30440525 |
agtgaaaacctagaaaaagaccagatgtaataagttttat |
30440564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4436153 - 4435934
Alignment:
| Q |
1 |
aaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
4436153 |
aaaatttgtaaacggtcactctatcagacacaaagcaaatcaaaattctaacatcaacattaacaaaatctacatcagaatcaagattatcaccaatttt |
4436054 |
T |
|
| Q |
101 |
ataatgaaaacctagaataagaccggaagtaataaattttatagtgataatctacatcagctttgaataaattgcttcttgattcagacagctcctgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
4436053 |
ataatgaaaacctagaataagaccggaagtaataaattttatagtgataatctacatcagctttgaataaattgcttcctgattcagacagctcctgcaa |
4435954 |
T |
|
| Q |
201 |
acatcctttaattttactat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4435953 |
acatcctttaattttactat |
4435934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4092373 - 4092156
Alignment:
| Q |
1 |
aaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttt |
100 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4092373 |
aaaatttgtatacggtcact--atcaaacacaaatcaaatcgaaattctaacatcaatattaacaaaatctacaccagaatcaagattatcaccaatttc |
4092276 |
T |
|
| Q |
101 |
ataatgaaaacctagaataagaccggaagtaataaattttatagtgataatctacatcagctttgaataaattgcttcttgattcagacagctcctgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||| |||||| |
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|
| T |
4092275 |
ataatgaaaacctagaataagaccagatgtaataaattttatagtgaaaatctacatcagccttgaataaattgcttcctgatttagacagctactgcaa |
4092176 |
T |
|
| Q |
201 |
acatcctttaattttactat |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
4092175 |
acatcctttaattttactat |
4092156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 46594685 - 46594904
Alignment:
| Q |
1 |
aaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46594685 |
aaaatttgtaaacggtcactctatcagacacaaagcaaatcaaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttt |
46594784 |
T |
|
| Q |
101 |
ataatgaaaacctagaataagaccggaagtaataaattttatagtgataatctacatcagctttgaataaattgcttcttgattcagacagctcctgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
46594785 |
ataatgaaaacctagaataagaccggaagtaatagattttatagtgataatctacatcagctttgaataaattgcttcctgattcagacagctcctgcaa |
46594884 |
T |
|
| Q |
201 |
acatcctttaattttactat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
46594885 |
acatcctttaattttactat |
46594904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 47521637 - 47521418
Alignment:
| Q |
1 |
aaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47521637 |
aaaatttgtatacggtcactctatcagacacgaatcaaatcaaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttt |
47521538 |
T |
|
| Q |
101 |
ataatgaaaacctagaataagaccggaagtaataaattttatagtgataatctacatcagctttgaataaattgcttcttgattcagacagctcctgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
47521537 |
ataatgaaaacctagaataagaccatatgtaataaattttatagtgaaaatctacatcaactttgaataaattgcttcctgattcagacagctcctgcaa |
47521438 |
T |
|
| Q |
201 |
acatcctttaattttactat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47521437 |
acatcctttaattttactat |
47521418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 26496273 - 26496209
Alignment:
| Q |
156 |
atcagctttgaataaattgcttcttgattcagacagctcctgcaaacatcctttaattttactat |
220 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26496273 |
atcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactat |
26496209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 26496346 - 26496296
Alignment:
| Q |
74 |
accagaatcaagattatcaccaattttataatgaaaacctagaataagacc |
124 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
26496346 |
accagaatcaagattatccccaattttatagtgaaaacctagaataagacc |
26496296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 26496391 - 26496351
Alignment:
| Q |
2 |
aaatttgtaaacggtcactctatcagacacaaatcaaatcg |
42 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26496391 |
aaatttgtatacggtcactctatcagacacaaatcaaatcg |
26496351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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