View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16925_low_3 (Length: 422)
Name: NF16925_low_3
Description: NF16925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16925_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 12685253 - 12685653
Alignment:
| Q |
1 |
tattacttgagaggttcatgatcctgtcaccttgttatcttcgctgaaattgctttccactactcaagcttcctattttctattaactattaagtatata |
100 |
Q |
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| T |
12685253 |
tattacttgagaggttcatgatcctgtcaccttgttatcttcactgaaattgctttccactcctcaagcttcctattttctattaactattaagtatata |
12685352 |
T |
|
| Q |
101 |
tttcaggctttaggtagttgtattttccctgaatgagttttcattttatggaaattcattgtgtaaaaagatctagttttcctagttattgtcttccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
12685353 |
tttcaggctttaggtagttgtattttccctgaatgagttttcattttatggaaattcattgtgtaaaaagatctagttatc---------gtcttccatt |
12685443 |
T |
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| Q |
201 |
tacttcatagtacatcacctttgatgtacaatatacttactttcagaatgactgtccttgattcatcatcttttgtatttatttttcggttaaagtgaat |
300 |
Q |
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| T |
12685444 |
tacttcatagtacatcacctttgatgtacaatacacttactttcagaatgactgtccttgattcatcatcttttgtatttatttttcggttaaagtgaat |
12685543 |
T |
|
| Q |
301 |
tattactgtctagtttaacttggtaactcatgccaaatgtacaaagatcattttgtattttgatcgcaatatatggtttagctcttggtatatttttggt |
400 |
Q |
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| T |
12685544 |
tattactgtctggtttaacttggtaactcatgccaaatgtacaaagatcattttgtattttgttcgcaatatatggtttagctcttggtatatttttggt |
12685643 |
T |
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| Q |
401 |
attagatttt |
410 |
Q |
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| T |
12685644 |
attagatttt |
12685653 |
T |
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