View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16925_low_4 (Length: 389)
Name: NF16925_low_4
Description: NF16925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16925_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 51 - 371
Target Start/End: Original strand, 33187784 - 33188104
Alignment:
| Q |
51 |
aaaaaaggaggaaaaataacctgctttaagacgataatatttnnnnnnngatcccaattaatcctatactaacgaaagtcatgtcaataaacatagattt |
150 |
Q |
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| T |
33187784 |
aaaaaaggaggaaaaataacctgctttgagacgataatctttaacaaaagatcccaatgaatcctatactaacgaaactcatgtcaataaacataggttt |
33187883 |
T |
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| Q |
151 |
tgacataactcaataccaacggaaacatatacagttagaaccggtatattgttgtatgatttacctatgaccaggaatttttgtaggtctatgcaacata |
250 |
Q |
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| T |
33187884 |
tgacataactcaataccaacggaaacatatatagttagaaccggtatattgttgtatgatttacctatgaccaggaattttcgtaggtctaagcaacata |
33187983 |
T |
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| Q |
251 |
taccagtaattttattgacagtcactaaatgtgtccattggtatttgacgaatttaatgtagtggtgtcattaaacaatcgccgtagtggttcactgtgg |
350 |
Q |
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| T |
33187984 |
taccagtagttttattggcagtcactaaatgtgtccattggtatttgacgaatttaatgtagtggtgtcattaaacaatcgccgtagtgattcactgtgg |
33188083 |
T |
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| Q |
351 |
ttgaaatttgttcgatgcaat |
371 |
Q |
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| T |
33188084 |
ttgaaatttgttcgatgcaat |
33188104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33187734 - 33187766
Alignment:
| Q |
1 |
ggaaagagtgaaaataactagcatcaagatgta |
33 |
Q |
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| T |
33187734 |
ggaaagagtgaaaataactagcatcaagatgta |
33187766 |
T |
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