View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16925_low_5 (Length: 332)

Name: NF16925_low_5
Description: NF16925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16925_low_5
NF16925_low_5
[»] chr1 (2 HSPs)
chr1 (18-317)||(28679510-28679795)
chr1 (197-248)||(40618903-40618954)
[»] chr3 (8 HSPs)
chr3 (202-258)||(2105705-2105761)
chr3 (202-241)||(17035937-17035976)
chr3 (217-274)||(13042791-13042848)
chr3 (217-274)||(13050868-13050925)
chr3 (284-317)||(40645804-40645837)
chr3 (210-258)||(33771696-33771744)
chr3 (155-195)||(41739884-41739924)
chr3 (210-250)||(54584039-54584079)
[»] chr8 (7 HSPs)
chr8 (197-250)||(12249500-12249553)
chr8 (197-252)||(31086066-31086121)
chr8 (203-241)||(26261312-26261350)
chr8 (139-195)||(36437658-36437714)
chr8 (210-246)||(39756975-39757011)
chr8 (203-259)||(42208475-42208531)
chr8 (155-195)||(45185176-45185216)
[»] chr2 (2 HSPs)
chr2 (197-258)||(21482526-21482587)
chr2 (219-271)||(5137799-5137851)
[»] chr5 (3 HSPs)
chr5 (197-241)||(14681278-14681322)
chr5 (210-247)||(6898027-6898064)
chr5 (210-266)||(3671224-3671280)
[»] chr6 (3 HSPs)
chr6 (202-261)||(1918462-1918521)
chr6 (201-267)||(404160-404226)
chr6 (197-259)||(12412270-12412332)
[»] chr4 (9 HSPs)
chr4 (195-250)||(1737152-1737207)
chr4 (197-252)||(5185121-5185176)
chr4 (202-253)||(48472959-48473010)
chr4 (210-259)||(16733525-16733574)
chr4 (203-251)||(11166685-11166733)
chr4 (210-266)||(19908698-19908754)
chr4 (197-253)||(29908049-29908105)
chr4 (202-250)||(30380528-30380576)
chr4 (197-253)||(54151637-54151693)
[»] scaffold0045 (1 HSPs)
scaffold0045 (197-250)||(42211-42264)
[»] chr7 (1 HSPs)
chr7 (217-261)||(41029285-41029329)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 28679510 - 28679795
Alignment:
Q  18 gtgagaggacacggtttatttttgaatggtttgccgatccgatagacaatctattagagtctattcggaagtttaagacgggatgggagagctttatact 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  28679510 gtgagaggacacggtttatttttgaatggtttgccgatccgatagacaatctattagagtctattcggaagtttaagaggagatgggagagctttatact 28679609  T
Q  118 ctctccctaaatactattttcactaaaacttggtcattaaatataaactcattttctaattactggatacatttattactgtcttcgtgaatttaactta 217  Q
    |||||||||||||||||||||||              |||||||||||||||||| |||||| | |||||||||||||||||| | || |||||||||||    
T  28679610 ctctccctaaatactattttcac--------------taaatataaactcattttttaattattagatacatttattactgtcattgtaaatttaactta 28679695  T
Q  218 gttggtaaagataatgtataatatgtgcaaggtccgcggttcgatccccaaaaaccatnnnnnnnntgcatttgttatttttcctaaacatacccctaat 317  Q
    ||||||||||| |||| ||||||| |||||||||||| ||||||| |||||||||||         || ||||||||||||||||||| |||||||||||    
T  28679696 gttggtaaagacaatgcataatatctgcaaggtccgctgttcgattcccaaaaaccacaaaaaaaatgtatttgttatttttcctaaaaatacccctaat 28679795  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 40618903 - 40618954
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaag 248  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||    
T  40618903 tgtcttcgtgagtttaactcagttggtaaagataatgcataatatatgcaag 40618954  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 2105761 - 2105705
Alignment:
Q  202 tcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggtt 258  Q
    ||||||| |||||| |||||||||| |||||||||||||| ||||||||||| ||||    
T  2105761 tcgtgaacttaactcagttggtaaaaataatgtataatatatgcaaggtccgaggtt 2105705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 17035976 - 17035937
Alignment:
Q  202 tcgtgaatttaacttagttggtaaagataatgtataatat 241  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17035976 tcgtgaatttaacttagttggtaaggataatgtataatat 17035937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 13042848 - 13042791
Alignment:
Q  217 agttggtaaagataatgtataatatgtgcaaggtccgcggttcgatccccaaaaacca 274  Q
    |||||||||||| ||| |||||||| ||||||||||| ||||||| ||||||| ||||    
T  13042848 agttggtaaagacaatttataatatatgcaaggtccggggttcgaaccccaaacacca 13042791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 13050925 - 13050868
Alignment:
Q  217 agttggtaaagataatgtataatatgtgcaaggtccgcggttcgatccccaaaaacca 274  Q
    |||||||||||| ||| |||||||| ||||||||||| ||||||| ||||||| ||||    
T  13050925 agttggtaaagacaatttataatatatgcaaggtccggggttcgaaccccaaacacca 13050868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 40645837 - 40645804
Alignment:
Q  284 tgcatttgttatttttcctaaacatacccctaat 317  Q
    ||||||| ||||||||||||||||||||||||||    
T  40645837 tgcatttattatttttcctaaacatacccctaat 40645804  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 33771696 - 33771744
Alignment:
Q  210 ttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggtt 258  Q
    |||||| ||||||||| || |||||||||||| |||||||||| |||||    
T  33771696 ttaactcagttggtaaggacaatgtataatatatgcaaggtccacggtt 33771744  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 41739884 - 41739924
Alignment:
Q  155 taaatataaactcattttctaattactggatacatttatta 195  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  41739884 taaatataaactcattttcaaattactaggtacatttatta 41739924  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 54584039 - 54584079
Alignment:
Q  210 ttaacttagttggtaaagataatgtataatatgtgcaaggt 250  Q
    |||| ||||||||||||||||||| ||||||| ||||||||    
T  54584039 ttaatttagttggtaaagataatgcataatatatgcaaggt 54584079  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 12249553 - 12249500
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggt 250  Q
    |||||||||||  |||||| | ||||||||||||||||||||||| ||||||||    
T  12249553 tgtcttcgtgagcttaactcaattggtaaagataatgtataatatatgcaaggt 12249500  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 31086066 - 31086121
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtcc 252  Q
    |||| ||||||| ||||||||||||  |||||||||||||||| | ||||||||||    
T  31086066 tgtcctcgtgaacttaacttagttgacaaagataatgtataatgtatgcaaggtcc 31086121  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 26261350 - 26261312
Alignment:
Q  203 cgtgaatttaacttagttggtaaagataatgtataatat 241  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  26261350 cgtgagtttatcttagttggtaaagataatgtataatat 26261312  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 36437714 - 36437658
Alignment:
Q  139 actaaaacttggtcattaaatataaactcattttctaattactggatacatttatta 195  Q
    ||||||| || ||| ||||||||||||| |||||| ||||||| ||| |||||||||    
T  36437714 actaaaaatttgtccttaaatataaactaattttcaaattactagatgcatttatta 36437658  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 39756975 - 39757011
Alignment:
Q  210 ttaacttagttggtaaagataatgtataatatgtgca 246  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  39756975 ttaacttagttggtaaaaataatgtataatatatgca 39757011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 42208531 - 42208475
Alignment:
Q  203 cgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggttc 259  Q
    |||||||||| || ||||||||| || |||| ||||||| ||||||||||| |||||    
T  42208531 cgtgaatttagctcagttggtaaggacaatgcataatatatgcaaggtccgaggttc 42208475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 45185176 - 45185216
Alignment:
Q  155 taaatataaactcattttctaattactggatacatttatta 195  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  45185176 taaatgtaaactcattttcaaattactggatgcatttatta 45185216  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 21482587 - 21482526
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggtt 258  Q
    |||| |||||| |||| || ||||||||| ||||||||||||||| ||||||||||| ||||    
T  21482587 tgtcctcgtgagtttagctcagttggtaaggataatgtataatatatgcaaggtccggggtt 21482526  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 5137851 - 5137799
Alignment:
Q  219 ttggtaaagataatgtataatatgtgcaaggtccgcggttcgatccccaaaaa 271  Q
    ||||||| || |||||||||||| ||||||||||| ||||||| | |||||||    
T  5137851 ttggtaaggacaatgtataatatatgcaaggtccggggttcgaacaccaaaaa 5137799  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 14681322 - 14681278
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatat 241  Q
    |||| |||||| ||||||||||||||||||||||||| |||||||    
T  14681322 tgtcatcgtgagtttaacttagttggtaaagataatgcataatat 14681278  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 6898027 - 6898064
Alignment:
Q  210 ttaacttagttggtaaagataatgtataatatgtgcaa 247  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  6898027 ttaacttagttggtaaagataatgcataatatatgcaa 6898064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 3671224 - 3671280
Alignment:
Q  210 ttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggttcgatcccc 266  Q
    |||||| ||||| ||| ||||||||||||||| ||||||||||  ||||||| ||||    
T  3671224 ttaactcagttgataaggataatgtataatatatgcaaggtccagggttcgaacccc 3671280  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 1918521 - 1918462
Alignment:
Q  202 tcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggttcga 261  Q
    |||||| ||||||| |||||||| ||| |||| ||||||| ||||||||||| |||||||    
T  1918521 tcgtgagtttaactcagttggtatagacaatgcataatatatgcaaggtccgaggttcga 1918462  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 404160 - 404226
Alignment:
Q  201 ttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggttcgatcccca 267  Q
    |||||||  |||||||||||||||| || |||| ||||||| ||||| ||||| ||||||| |||||    
T  404160 ttcgtgagcttaacttagttggtaaggacaatgcataatatatgcaatgtccgaggttcgaacccca 404226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 12412270 - 12412332
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggttc 259  Q
    |||| ||||||  ||||||||||||||| ||| |||| ||||||| ||||||||| |||||||    
T  12412270 tgtcctcgtgagcttaacttagttggtagagacaatgcataatatatgcaaggtctgcggttc 12412332  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 1737152 - 1737207
Alignment:
Q  195 actgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggt 250  Q
    ||||||||||||||||||||| ||||||| |||| |||| |||| || ||||||||    
T  1737152 actgtcttcgtgaatttaactcagttggttaagacaatgcataaaatatgcaaggt 1737207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 5185121 - 5185176
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtcc 252  Q
    |||| |||||| ||||||| |||||||| |||||||||||||||| || |||||||    
T  5185121 tgtcctcgtgagtttaactcagttggtatagataatgtataatatatgtaaggtcc 5185176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 48472959 - 48473010
Alignment:
Q  202 tcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtccg 253  Q
    ||||||| |||||| ||||| ||||||||||| ||||||| |||||||||||    
T  48472959 tcgtgaacttaactcagttgataaagataatgcataatatttgcaaggtccg 48473010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 16733574 - 16733525
Alignment:
Q  210 ttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggttc 259  Q
    |||||| ||||| ||||||||||||||||||| |||||| |||| |||||    
T  16733574 ttaactcagttgataaagataatgtataatatatgcaagatccgaggttc 16733525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 11166685 - 11166733
Alignment:
Q  203 cgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtc 251  Q
    ||||| |||| |||||||||||| || |||||||||||| |||||||||    
T  11166685 cgtgagtttatcttagttggtaaggacaatgtataatatatgcaaggtc 11166733  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 19908698 - 19908754
Alignment:
Q  210 ttaacttagttggtaaagataatgtataatatgtgcaaggtccgcggttcgatcccc 266  Q
    |||||| ||||||||| || |||| ||||||| ||||||||||| ||||||| ||||    
T  19908698 ttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttcgaacccc 19908754  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 29908049 - 29908105
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtccg 253  Q
    |||||||||||  |||||| ||||||||| || |||| ||||||| |||||||||||    
T  29908049 tgtcttcgtgagcttaactcagttggtaaggacaatgcataatatatgcaaggtccg 29908105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 30380528 - 30380576
Alignment:
Q  202 tcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggt 250  Q
    |||||| ||||||| ||||||||| || |||||||||||| ||||||||    
T  30380528 tcgtgagtttaactcagttggtaaggacaatgtataatatatgcaaggt 30380576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 54151693 - 54151637
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggtccg 253  Q
    |||| ||||||  |||||| ||||||||| ||||||||||||||| ||||| |||||    
T  54151693 tgtcctcgtgagcttaactcagttggtaaggataatgtataatatatgcaaagtccg 54151637  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 42211 - 42264
Alignment:
Q  197 tgtcttcgtgaatttaacttagttggtaaagataatgtataatatgtgcaaggt 250  Q
    |||| ||||||| |||| ||||||| || |||||||||||||||| ||||||||    
T  42211 tgtcatcgtgaacttaatttagttgatagagataatgtataatatatgcaaggt 42264  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 41029285 - 41029329
Alignment:
Q  217 agttggtaaagataatgtataatatgtgcaaggtccgcggttcga 261  Q
    ||||||||| || |||||||||||| ||||||||||| |||||||    
T  41029285 agttggtaaggacaatgtataatatatgcaaggtccggggttcga 41029329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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