View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16925_low_7 (Length: 253)
Name: NF16925_low_7
Description: NF16925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16925_low_7 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 47 - 253
Target Start/End: Original strand, 37718781 - 37718987
Alignment:
| Q |
47 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37718781 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
37718880 |
T |
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| Q |
147 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37718881 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactgactacaatt |
37718980 |
T |
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| Q |
247 |
ttgaaat |
253 |
Q |
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||||||| |
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| T |
37718981 |
ttgaaat |
37718987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 4436379 - 4436173
Alignment:
| Q |
47 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
146 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4436379 |
taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
4436280 |
T |
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| Q |
147 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt |
246 |
Q |
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| T |
4436279 |
taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactaactacaatt |
4436180 |
T |
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| Q |
247 |
ttgaaat |
253 |
Q |
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||||||| |
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| T |
4436179 |
ttgaaat |
4436173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 76 - 252
Target Start/End: Complemental strand, 4092582 - 4092405
Alignment:
| Q |
76 |
ttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatttcaaacaactaaaaatatcaaat |
175 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
4092582 |
ttgtgatctttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatggttgatactaaatttcaaacaactaaaaatatcacat |
4092483 |
T |
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| Q |
176 |
tcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactactgactacaattttgaaa |
252 |
Q |
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|||||||||||||||||||||||| ||||||| |||| ||| ||| |||||||||||||| ||||||||||||||||| |
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| T |
4092482 |
tcaatttctataattttgaaaccccttctatggctgactccagtacaggtttgactactattgactacaattttgaaa |
4092405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 47 - 253
Target Start/End: Original strand, 46594459 - 46594665
Alignment:
| Q |
47 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
146 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46594459 |
taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
46594558 |
T |
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| Q |
147 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt |
246 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
46594559 |
taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactaactacaatt |
46594658 |
T |
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| Q |
247 |
ttgaaat |
253 |
Q |
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||||||| |
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| T |
46594659 |
ttgaaat |
46594665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 25490221 - 25490131
Alignment:
| Q |
62 |
cctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatt |
152 |
Q |
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|||||| | |||||| |||||| ||||||| ||| |||||||||||||||| |||||||||| ||||||||| || |||||||| |||| |
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| T |
25490221 |
cctcaacttagttctagtgatccttttatcaaacggttataatgcaaagtagctttcatcaaagtgaatgacttgtaattgatactgaatt |
25490131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 47521879 - 47521674
Alignment:
| Q |
48 |
aagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatact |
147 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47521879 |
aagaatgaggcttgcctcaagtaagttcttgtgatttttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatagttgatact |
47521780 |
T |
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| Q |
148 |
aaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactactgactacaatt |
246 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |
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| T |
47521779 |
aaatttcaaacaactaaaaatatcacattcaatttctataattttgaaaccccttctatggttgattccagtacaggtttgactactactgactacaatt |
47521680 |
T |
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| Q |
247 |
ttgaaa |
252 |
Q |
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|||||| |
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| T |
47521679 |
ttgaaa |
47521674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 26496597 - 26496407
Alignment:
| Q |
47 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
146 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26496597 |
taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
26496498 |
T |
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| Q |
147 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactact |
236 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||| ||| |||||||||||||||| |
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| T |
26496497 |
taaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaacccattcaatggctgattccagtacaggtttgactactact |
26496407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 38016318 - 38016358
Alignment:
| Q |
59 |
ttgcctcaagtaagttcttgtgatctttttatcgaacaatt |
99 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
38016318 |
ttgcctcaagtaagttcttgtgatctttttattgaacaatt |
38016358 |
T |
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