View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16925_low_8 (Length: 239)
Name: NF16925_low_8
Description: NF16925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16925_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 17232631 - 17232402
Alignment:
| Q |
1 |
gttaccctttcgcctatgattctgttattgaatgtcagggtccatattgtctggaatgtccagacgaccatcctcctcgccaacatgataaataactcgg |
100 |
Q |
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| T |
17232631 |
gttaccctttcgcctatgattctgttattgaatgtcagggtccatattgtctggaatgtccagacaaccatcctcctcgccaacatgataaataactcgg |
17232532 |
T |
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| Q |
101 |
tatggattcattgtcggattcataatgtcagtgtttttgcttggcaaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatgaa |
200 |
Q |
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| T |
17232531 |
tatggattcattgtcggattcataatgtcagtgtttttgcttggcaaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatgaa |
17232432 |
T |
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| Q |
201 |
tccaacaatgtgttaatcattcattcattt |
230 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
17232431 |
tccgacaatgtgttaatcattcattcattt |
17232402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 1251383 - 1251301
Alignment:
| Q |
147 |
aagagctcccataagatgaccccatagcttaaaacatcacacctataaaatgaatccaacaatgtgttaatcattcattcatt |
229 |
Q |
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| T |
1251383 |
aagagctcccataagatgacctcatagctaaaaacatcacacctaaaaaatgaatccgacaatgtgttaatcattcattcatt |
1251301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 15007779 - 15007595
Alignment:
| Q |
35 |
tcagggtccatattgtctggaatgtccagacgaccatcctcctcgccaacatgataaataactcggtatggattcattgtcggattcataatgtcagtgt |
134 |
Q |
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| T |
15007779 |
tcaggggccataatgtctggaatgtccagacggccatcctcctcaccaacatgataaataactcgatatagattcact-tct--ttc-------cagggt |
15007690 |
T |
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| Q |
135 |
ttttgcttggcaaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatgaatccaacaatgtgttaatcattcattcattt |
230 |
Q |
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| T |
15007689 |
tcctgcttggtaaagagctcccataagatgaccccataactaaaaatatcacacctacaaaatgaat-cgacaatgtgttgatcactcattcattt |
15007595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 15021896 - 15021712
Alignment:
| Q |
35 |
tcagggtccatattgtctggaatgtccagacgaccatcctcctcgccaacatgataaataactcggtatggattcattgtcggattcataatgtcagtgt |
134 |
Q |
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| T |
15021896 |
tcaggggccataatgtctggaatgtccagacggccatcctcctcaccaacatgataaataactcgatatagatacact-tct--ttc-------cagggt |
15021807 |
T |
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| Q |
135 |
ttttgcttggcaaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatgaatccaacaatgtgttaatcattcattcattt |
230 |
Q |
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| T |
15021806 |
tcctgcttggtaaagagctcccataagatgaccccataactaaaaacatcacacctacaaaatgaat-cgacaatgtgttgatcactcattcattt |
15021712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 15029014 - 15028830
Alignment:
| Q |
35 |
tcagggtccatattgtctggaatgtccagacgaccatcctcctcgccaacatgataaataactcggtatggattcattgtcggattcataatgtcagtgt |
134 |
Q |
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|||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||| || | || ||| ||| || |
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| T |
15029014 |
tcaggggccataatgtctggaatgtccagacggccatcctcctcaccaacatgataaataactcgatatagatacact-tct--ttc-------cagggt |
15028925 |
T |
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| Q |
135 |
ttttgcttggcaaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatgaatccaacaatgtgttaatcattcattcattt |
230 |
Q |
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| T |
15028924 |
tcctgcttggtaaagagctcccataagatgaccccataactaaaaacatcacacctacaaaatgaat-cgacaatgtgttgatcactcattcattt |
15028830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 1251479 - 1251415
Alignment:
| Q |
46 |
attgtctggaatgtccagacgaccatcctcctcgccaacatgataaataactcggtatggattca |
110 |
Q |
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| T |
1251479 |
attgtttggaatgtccagacggccatcctcctcgccaacatgataaataattcggtatgaattca |
1251415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 45204856 - 45204772
Alignment:
| Q |
146 |
aaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatgaatccaacaatgtgttaatcattcattcattt |
230 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| | ||||| |||||||||||||||||| |
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| T |
45204856 |
aaagagctcccataatatgaccccatagctaaaaacatcacacctacaaaatgaatccgataatgttttaatcattcattcattt |
45204772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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