View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16926_high_1 (Length: 581)
Name: NF16926_high_1
Description: NF16926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16926_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 44702757 - 44702189
Alignment:
| Q |
1 |
gggagagaatatgaa-----tgtaatgtaaaattaaagaaaccttcaaaaataatggaaattattttagtaaaagatatgctttatcaatgtttttattg |
95 |
Q |
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| T |
44702757 |
gggagagaatatgaatgtattgtaatgtcaaattaaagaaaccttcaaaaataatggaaattattttagtaaaagatatgctttatcaatgtttttattg |
44702658 |
T |
|
| Q |
96 |
gtcaagtggaatcatcttaccctcgaaagaaaatgatttgggacatcgagaacttcgaactaaggaaaaattatgcttaatcttaaaaccaaaacatagt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44702657 |
gtcaagtggaatcatcttaccctcgaaagaaaatgatttgggacatcgagaacttcgaactaaggaaaaattatgcttaatcttaaaaccaaaacatagt |
44702558 |
T |
|
| Q |
196 |
ttcatagatggtccaaaaatggccaaaactgtgggtgtatcatgatagaattattcactgtcaaaagccatagttacggtagattctgaagaaagaaaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44702557 |
ttcatagatggtccaaaaatggccaaaactgtgggtgtatcatgatagaattattcactgtcaaaagccatagttacggtagattctgaagaaagaaaaa |
44702458 |
T |
|
| Q |
296 |
taagataaacattagtaagcgtaaaaaatgtttacacaattatatagcatattttatggatattctcatatattcctttgatttctagtatgaaggaaaa |
395 |
Q |
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|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44702457 |
taagataaaccttggtaagtgtaaaaaatgtttacacaattatatagcatattttatggatattctcatatattcctttgatttcaagtatgaaggaaaa |
44702358 |
T |
|
| Q |
396 |
acatattgtaattaaagtctttatgcacttctttggcactagcatttgacccttgcaaattgaaaccgaacacatgttacaataacttttcaacttcctt |
495 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44702357 |
acatattgtaattaaagtcgttatgcacttctttggcactagcatttgacccttgcaaattgaaaccgaacacatgttacaataacttttcaacttcctt |
44702258 |
T |
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| Q |
496 |
gttagctactccacttgcactaaaagttcttccctaccaacttgaaacaaacattaaaatctacaagtt |
564 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44702257 |
gttagctactccacttgcactaaaagttcttccctaccaacttgaaacaaacattaaaatctacaagtt |
44702189 |
T |
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