View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16926_high_2 (Length: 495)
Name: NF16926_high_2
Description: NF16926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16926_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 439192 - 439650
Alignment:
| Q |
18 |
gagaagtgaatgccggaggaattcaacagactcaaaagatgaatgagagccaaaacatgttatccttactttagtgtaaacaannnnnnnnnnnnnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
439192 |
gagaagtgaatgccggaggaattcaacagactcaaaagatgaatgagagccaaaacatgttatccttactttagtgtagacaatttttcttttttgtttt |
439291 |
T |
|
| Q |
118 |
agatgtcaatgttgatgtagcattcaaatgtcttgcaattaatgaagccaaatatttcttttgtgatcattaatattgaccagagaacatatttcaaatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
439292 |
agatgtcaatgttgatgtagcattcaaatgtcttgcaattaatgaagccaaatatttcttttgtgatcattaataatgaccagagaacatatttcaaatc |
439391 |
T |
|
| Q |
218 |
taatcactagtcatggtttataaaatagtgttgtcaaagacgagtagagacttattcataccataacaattctaacattgaatgaactcaaacannnnnn |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
439392 |
taatcactagtcatggtttataaaatagtgttgtcaaagacgagtagagacttattcataccataacaattttaacattcaatgaactcaaacatttttt |
439491 |
T |
|
| Q |
318 |
nnngtggttatattttctcatttaaagcttcacatttctctatattactacaaaagagaagagtataaagttgagatacaataaagaaaggcacaaagcc |
417 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
439492 |
tttgtggt--tattttctcatttaaagcttcacatttctctatactactacaaaagagaagagtataaagttgagatacaataaagaaagacacaaagcc |
439589 |
T |
|
| Q |
418 |
gattctcccgtcccctctaaagtcccaaacagaatcaccgggaattgccgtccacgtcact |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
439590 |
gattctcccgtcccctctaaagtcccaaacagaatcaccgggaattgccgtccacgtcact |
439650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University