View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16926_high_8 (Length: 315)

Name: NF16926_high_8
Description: NF16926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16926_high_8
NF16926_high_8
[»] chr2 (1 HSPs)
chr2 (5-300)||(40464754-40465048)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 300
Target Start/End: Original strand, 40464754 - 40465048
Alignment:
Q  5 gagtgatatgaatagggtcttccaaaaatgcatttgtatcagcagggaaagatgtaatgatgagnnnnnnnngaaggtagtggactcaataaataaatgt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| |||||||    
T  40464754 gagtgatatgagtagggtcttccaaaaatgcatttgtatcagcagggaaagatgtaatgatgagttttttt-gaaggtagtggactcaataattaaatgt 40464852  T
Q  105 aactaaaataaattgtcgcacacaaactaaacttaacaatgtagtaaatgaatgtttgaatctcgaatnnnnnnnntcgacagttaatgatgtatgacat 204  Q
    ||||||||||||||||||||||||||||| |||| ||||||||  |||||||||||||||||||||||        |||||||||||| |||||||||||    
T  40464853 aactaaaataaattgtcgcacacaaactagacttcacaatgtaacaaatgaatgtttgaatctcgaataaaaaaaatcgacagttaattatgtatgacat 40464952  T
Q  205 atttcgaataaaagtatctttagtggagcttatttatagtgaactaaaataaaaagttgtcgcaaaaagcttccttttaattattaatgtaatttt 300  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40464953 atttcgaataaaattatctttagtggagtttatttatagggaactaaaataaaaagttgtcgcaaaaagcttccttttaattattaatgtaatttt 40465048  T

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