View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16926_low_14 (Length: 254)
Name: NF16926_low_14
Description: NF16926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16926_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 44056152 - 44055913
Alignment:
| Q |
15 |
cacagatataggaaagcttgctctttcggctgcactcatcagtgatgtgtgtgcttggattctcttggctttagccattgcaatggctgagaaccaagca |
114 |
Q |
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| T |
44056152 |
cacagatataggaaagcttgctctttcggctgcactcatcagtgatgtgtgtgcttggattctcttggctttagccattgcaatggctgagaaccaagca |
44056053 |
T |
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| Q |
115 |
acttctttcgcttccctttgggttctattgtctgccgcagcgtttgtcgccatttgtatttacgctgttagacccgcagcttcatggatagttcggaaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44056052 |
acttctttcgcttccctttgggttctattgtctgccgcagcgtttgtcgccatttgtatttacgctgttagacccgcagcttcatggatagttcagaaaa |
44055953 |
T |
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| Q |
215 |
cacctgagggtgaatctttcagtgagttttatatatctct |
254 |
Q |
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| T |
44055952 |
cacctgagggtgaatctttcagtgagttttatatatctct |
44055913 |
T |
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