View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16926_low_16 (Length: 233)
Name: NF16926_low_16
Description: NF16926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16926_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 11073215 - 11073009
Alignment:
| Q |
11 |
agaatatcaaagatcgtgaggcatccattaccgcgaccactatataaaaccctaatatactaactccaaaacagagtaaaaataagagttgacctaacac |
110 |
Q |
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| T |
11073215 |
agaatatcaaagatcgtgaggcaaccattaccgtgaccactatataaaaccctaatatactaactccgaaacagagtaaaaataagagttgacctaacac |
11073116 |
T |
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| Q |
111 |
ccaatgtaatcgttttatctaatnnnnnnnccctagtgtatataacaagcaatgtgaaattatgcaaacataaaaaacttagggcctgtttggattggct |
210 |
Q |
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| T |
11073115 |
ccaatgtaatcgttttatctaataaaaaaaccctagtgtatataacaagcaatgtgaaattatgcaaacataaaaaacttagggcctgtttggattggct |
11073016 |
T |
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| Q |
211 |
tgttttt |
217 |
Q |
| |
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||||||| |
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| T |
11073015 |
tgttttt |
11073009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 13097872 - 13097904
Alignment:
| Q |
187 |
acttagggcctgtttggattggcttgtttttga |
219 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
13097872 |
acttagggcctgtttggattggcttatttttga |
13097904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 507358 - 507330
Alignment:
| Q |
187 |
acttagggcctgtttggattggcttgttt |
215 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
507358 |
acttagggcctgtttggattggcttgttt |
507330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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