View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16926_low_3 (Length: 407)
Name: NF16926_low_3
Description: NF16926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16926_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 67 - 407
Target Start/End: Original strand, 311019 - 311359
Alignment:
| Q |
67 |
gggatgggatctaaacagaaacagtgaggagaccagcaagagaacccaaaacagcaaaagcaagaagaggactaatatcaagagtatcaaaaacaggtgg |
166 |
Q |
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| T |
311019 |
gggatggaatctaaacagaaacagtgaggagaccagcaagagaacccaaaacagcaaaagcaagaagaggactaatatcaagagtatcaaaaacaggtgg |
311118 |
T |
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| Q |
167 |
aacaatattcctaaacaaacttagataaggatcacaaagatccctaattgcagacaatggttgtctttcccatggaatgttcggaaaccaactcaacaaa |
266 |
Q |
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| T |
311119 |
aacaatattcctaaacaaacttagataaggatcacaaagatccctaattgcagacaatggttgtctttcccatggaatgttcggaaaccaactcaacaaa |
311218 |
T |
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| Q |
267 |
accctaaccaacaacacaccactgtaaatatccaaccatttcttcaaccccgccgctacaaccgtcaacggcgtgttcaccgtccccgacctggtatttt |
366 |
Q |
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| T |
311219 |
accctaaccaacaacacaccactgtaaatatccaaccatttcttcaaccccgccgctacaaccgtcaacggcgtgttcaccgtccccgacctagtatttt |
311318 |
T |
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| Q |
367 |
tcatgacagcgaaacaaagcgacgctgatgatgttgcaatt |
407 |
Q |
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| T |
311319 |
tcatgacagcgaaacaaagcgacgctgatgatgttgcaatt |
311359 |
T |
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