View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16926_low_4 (Length: 385)

Name: NF16926_low_4
Description: NF16926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16926_low_4
NF16926_low_4
[»] chr1 (9 HSPs)
chr1 (1-326)||(8016214-8016542)
chr1 (207-264)||(46252676-46252733)
chr1 (229-266)||(1565551-1565588)
chr1 (207-244)||(3223706-3223743)
chr1 (209-262)||(5886990-5887043)
chr1 (317-346)||(8016160-8016189)
chr1 (207-264)||(10809364-10809421)
chr1 (218-275)||(38503470-38503527)
chr1 (210-246)||(29635384-29635420)
[»] chr6 (3 HSPs)
chr6 (207-264)||(3528822-3528879)
chr6 (207-256)||(281842-281891)
chr6 (203-244)||(6536986-6537027)
[»] chr7 (1 HSPs)
chr7 (207-263)||(25670580-25670636)
[»] chr5 (1 HSPs)
chr5 (210-264)||(11707074-11707128)
[»] chr2 (4 HSPs)
chr2 (218-264)||(35379021-35379067)
chr2 (210-264)||(44443340-44443394)
chr2 (207-264)||(43199778-43199835)
chr2 (204-264)||(43910990-43911050)
[»] chr8 (2 HSPs)
chr8 (3-40)||(4577008-4577045)
chr8 (207-264)||(7714261-7714318)
[»] chr3 (2 HSPs)
chr3 (141-174)||(1288764-1288797)
chr3 (212-264)||(41633379-41633431)
[»] chr4 (1 HSPs)
chr4 (145-177)||(38336816-38336848)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 8016542 - 8016214
Alignment:
Q  1 tgttttatgcattggatcttggaggaacaaactttcgtgtgttgagggtacaattaggtggcaaagatgatcgtgtcattgatgttgactttgatcaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016542 tgttttatgcattggatcttggaggaacaaactttcgtgtgttgagggtacaattaggtggcaaagatgatcgtgtcattgatgttgactttgatcaagt 8016443  T
Q  101 tgctatacctcatgatctaatgtttgctacatccgaggttagtttgttttgattgacttatttgagctt---atcaattgtctcgaatatttatgagact 197  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||   ||||||||||| ||||||||||||||||    
T  8016442 tgctatacctcatgatctaatgtttgctacgtccgaggttagtttgttttgattgacttatttgagattatcatcaattgtcttgaatatttatgagact 8016343  T
Q  198 ggccaggagaacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaactcatatgaaaacaataactcca 297  Q
    | || ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016342 gtccgggagaacttatgacatgttcataacttgttttcagcttattttcctaagctctccaagatagataacagaaactcatatgaaaacaataactcca 8016243  T
Q  298 ttttattttttgttatagaaaaatggctt 326  Q
    |||||||||||||||||||||||||||||    
T  8016242 ttttattttttgttatagaaaaatggctt 8016214  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 46252676 - 46252733
Alignment:
Q  207 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    ||||||||| ||||| |||| |||||||||| |||||||| | |||||||||||||||    
T  46252676 aacttatgacatgttcataagttgttttcaggttattttcataagctctccaagatag 46252733  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 1565551 - 1565588
Alignment:
Q  229 tgttttcagcttattttcctgagctctccaagatagat 266  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  1565551 tgttttcagcttattttcatgagctctccaaaatagat 1565588  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 3223743 - 3223706
Alignment:
Q  207 aacttatgaaatgtttataacttgttttcagcttattt 244  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  3223743 aacttatgacatgtttataagttgttttcagcttattt 3223706  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 5886990 - 5887043
Alignment:
Q  209 cttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagat 262  Q
    ||||||| ||||| |||| ||||||||||||||||||| | || ||||||||||    
T  5886990 cttatgacatgttcataagttgttttcagcttattttcgtaagttctccaagat 5887043  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 8016189 - 8016160
Alignment:
Q  317 aaaatggctttgcatgttaaagctttgatg 346  Q
    ||||||||||||||||||||||||||||||    
T  8016189 aaaatggctttgcatgttaaagctttgatg 8016160  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 10809421 - 10809364
Alignment:
Q  207 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    ||||||||| ||||||||||  |||||||||||||||||| | || ||||||| ||||    
T  10809421 aacttatgacatgtttataatatgttttcagcttattttcataagttctccaatatag 10809364  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 38503470 - 38503527
Alignment:
Q  218 tgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaac 275  Q
    |||| |||| ||||||||||||||||||| | || |||||||||||| ||||| ||||    
T  38503470 tgttcataagttgttttcagcttattttcataagttctccaagatagctaacaaaaac 38503527  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 29635420 - 29635384
Alignment:
Q  210 ttatgaaatgtttataacttgttttcagcttattttc 246  Q
    |||||| |||||||||| |||||||||||||||||||    
T  29635420 ttatgacatgtttataagttgttttcagcttattttc 29635384  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 3528879 - 3528822
Alignment:
Q  207 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    ||||||||| ||||  |||||||||||||| ||||||||| | |||||||||||||||    
T  3528879 aacttatgacatgtccataacttgttttcatcttattttcataagctctccaagatag 3528822  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 281842 - 281891
Alignment:
Q  207 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctc 256  Q
    ||||||||| |||| ||||| ||||||||||||||||| | |||||||||    
T  281842 aacttatgacatgtctataagttgttttcagcttatttccatgagctctc 281891  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 6537027 - 6536986
Alignment:
Q  203 ggagaacttatgaaatgtttataacttgttttcagcttattt 244  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  6537027 ggagaacttatgacatgttcataagttgttttcagcttattt 6536986  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 25670580 - 25670636
Alignment:
Q  207 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagata 263  Q
    ||||||||| ||||| |||| |||||||||||||||||||   ||||||||||||||    
T  25670580 aacttatgacatgttaataaattgttttcagcttattttcacaagctctccaagata 25670636  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 11707128 - 11707074
Alignment:
Q  210 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    |||||| |||||||||| |||||||||||||||||||   |||||| ||||||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatag 11707074  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 35379021 - 35379067
Alignment:
Q  218 tgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    |||| |||| ||||||||||||||||||| | |||||||||||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatag 35379067  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 44443394 - 44443340
Alignment:
Q  210 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    |||||||||||| |||| ||||||||||||||||||| |  |||||| |||||||    
T  44443394 ttatgaaatgttcataagttgttttcagcttattttcatatgctctcaaagatag 44443340  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 43199778 - 43199835
Alignment:
Q  207 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    ||||| ||| |||||||||| |||||||||||||| |||| | ||| |||||||||||    
T  43199778 aacttgtgacatgtttataagttgttttcagcttaatttcataagccctccaagatag 43199835  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 43910990 - 43911050
Alignment:
Q  204 gagaacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||   |||| ||||||||||    
T  43910990 gagaacttatgacatgttcataagttgttttcagcttattatcacaagctttccaagatag 43911050  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 4577045 - 4577008
Alignment:
Q  3 ttttatgcattggatcttggaggaacaaactttcgtgt 40  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  4577045 ttttatgcattggaccttggaggaactaactttcgtgt 4577008  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 7714318 - 7714261
Alignment:
Q  207 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    ||||||||||||||  || |  |||||||| ||||||||| |||||||||||||||||    
T  7714318 aacttatgaaatgtcgatgagctgttttcaacttattttcatgagctctccaagatag 7714261  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 1288764 - 1288797
Alignment:
Q  141 agtttgttttgattgacttatttgagcttatcaa 174  Q
    ||||||||| ||||||||||||||||||||||||    
T  1288764 agtttgtttggattgacttatttgagcttatcaa 1288797  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 41633431 - 41633379
Alignment:
Q  212 atgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 264  Q
    |||| |||| ||||| ||||||||||||||||||| | |||||||||| ||||    
T  41633431 atgacatgtctataaattgttttcagcttattttcataagctctccaaaatag 41633379  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 38336816 - 38336848
Alignment:
Q  145 tgttttgattgacttatttgagcttatcaattg 177  Q
    |||||||||||||||||||||||||||| ||||    
T  38336816 tgttttgattgacttatttgagcttatccattg 38336848  T

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