View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16926_low_6 (Length: 359)

Name: NF16926_low_6
Description: NF16926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16926_low_6
NF16926_low_6
[»] chr2 (6 HSPs)
chr2 (12-341)||(33026372-33026701)
chr2 (1-341)||(33037859-33038204)
chr2 (19-341)||(33020038-33020357)
chr2 (27-128)||(33023912-33024013)
chr2 (295-333)||(34570484-34570522)
chr2 (297-339)||(36577366-36577408)
[»] scaffold1004 (1 HSPs)
scaffold1004 (18-341)||(1867-2187)
[»] scaffold0760 (1 HSPs)
scaffold0760 (18-341)||(4362-4682)
[»] chr6 (1 HSPs)
chr6 (24-341)||(24417493-24417804)
[»] chr5 (7 HSPs)
chr5 (248-341)||(20292946-20293039)
chr5 (248-341)||(20301394-20301487)
chr5 (248-341)||(20305807-20305900)
chr5 (248-341)||(20310211-20310304)
chr5 (297-341)||(11081813-11081857)
chr5 (297-341)||(23766869-23766913)
chr5 (297-341)||(23816717-23816761)
[»] scaffold0044 (2 HSPs)
scaffold0044 (257-341)||(89103-89187)
scaffold0044 (33-128)||(88876-88971)
[»] chr3 (42 HSPs)
chr3 (258-341)||(2456210-2456293)
chr3 (252-341)||(13498179-13498268)
chr3 (253-341)||(2476590-2476678)
chr3 (257-341)||(7430543-7430627)
chr3 (258-341)||(771506-771589)
chr3 (286-340)||(43991949-43992003)
chr3 (284-341)||(2631344-2631401)
chr3 (284-341)||(9608351-9608408)
chr3 (256-341)||(37753352-37753437)
chr3 (297-341)||(3754600-3754644)
chr3 (161-204)||(763705-763748)
chr3 (161-204)||(9585279-9585322)
chr3 (284-341)||(7324438-7324495)
chr3 (18-75)||(9608626-9608683)
chr3 (155-224)||(44001473-44001542)
chr3 (37-77)||(771770-771810)
chr3 (158-198)||(783949-783989)
chr3 (297-341)||(803225-803269)
chr3 (297-341)||(4142141-4142185)
chr3 (297-341)||(4157951-4157995)
chr3 (253-341)||(9594631-9594719)
chr3 (299-341)||(997578-997620)
chr3 (299-341)||(1013968-1014010)
chr3 (297-339)||(2696741-2696783)
chr3 (161-211)||(9587322-9587372)
chr3 (284-341)||(754616-754673)
chr3 (24-77)||(784070-784123)
chr3 (299-340)||(2459277-2459318)
chr3 (252-341)||(2644369-2644458)
chr3 (158-187)||(7430652-7430681)
chr3 (98-131)||(7443203-7443236)
chr3 (24-77)||(9587459-9587512)
chr3 (147-204)||(43991813-43991870)
chr3 (285-341)||(783806-783862)
chr3 (297-341)||(968671-968715)
chr3 (287-339)||(1437986-1438037)
chr3 (253-341)||(2659159-2659247)
chr3 (297-341)||(2678406-2678450)
chr3 (253-341)||(7334246-7334334)
chr3 (289-341)||(9561992-9562044)
chr3 (253-341)||(9565836-9565924)
chr3 (284-340)||(9587193-9587249)
[»] chr7 (3 HSPs)
chr7 (162-211)||(27755555-27755604)
chr7 (287-341)||(39298967-39299021)
chr7 (301-341)||(3927063-3927103)
[»] chr1 (4 HSPs)
chr1 (159-197)||(51854806-51854844)
chr1 (159-197)||(51858465-51858503)
chr1 (297-338)||(23896147-23896188)
chr1 (159-204)||(51829632-51829677)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 33026372 - 33026701
Alignment:
Q  12 agagaggaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33026372 agagaggaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttttga 33026471  T
Q  112 gtggcactgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026472 gtggcactgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 33026571  T
Q  212 ggattttgagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatg 311  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026572 agattttgagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatg 33026671  T
Q  312 aagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||||||||||||||||||||||||    
T  33026672 aagcaatatggaaataaaaagtcttggact 33026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 33037859 - 33038204
Alignment:
Q  1 tgtggaggagcagagaggaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttgg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||  | | | |||    
T  33037859 tgtggagga-cagagaggaagtaagtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatgg 33037957  T
Q  101 aatatttgtgagtggcactgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacg 200  Q
    |||||||||  ||||||||||||||||| ||||||| ||| | ||||||||||  || ||||||||||||||||||||||||||||| | ||||||||||    
T  33037958 aatatttgtcggtggcactgttaattggttgtcgttagacgaagtgagttctttgtgcgtcattgtttctcttgatttggagaaggaatcgtatcaaacg 33038057  T
Q  201 ctttcgctgccggattttgagaaggatcgtttgataa------gaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttt 294  Q
    ||||||||||| ||| ||||||| |||| ||||| ||      |   |||| |||||||||||||||||||||||||||||| ||| | |||||||||||    
T  33038058 ctttcgctgcctgatattgagaatgatcctttgacaaatttgggggatttgggggttttgagggattgcttgtgcatctttgcaagtagtgatatgtttt 33038157  T
Q  295 tggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    | ||||||||| |||||||| |||||||||| |||||||||||||||    
T  33038158 ttgatgtttggattatgaaggaatatggaaacaaaaagtcttggact 33038204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 33020038 - 33020357
Alignment:
Q  19 aagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcac 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||| |  | | | |||||||||||||||||||||    
T  33020038 aagtaagtgttcatactttgggtacggatacttggagaaggataccagacttcccatgttttggcccgtgtcgtgggtatggaatatttgtgagtggcac 33020137  T
Q  119 tgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggatttt 218  Q
     ||||||||| || | |||||  ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||     
T  33020138 agttaattggttggcattcgaagatgtgagttctccgtgtgtcattgtttctcttgatttggagaaggagtcgtatcaaacgtttttgctgcctgatttc 33020237  T
Q  219 gagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaat 318  Q
    |||||||||| ||||   | || |||| ||||||||||||||||||||||| |||||| ||  | ||||||||||||  |||| ||| |||||||| |||    
T  33020238 gagaaggatcctttg---acaaatttgggggttttgagggattgcttgtgcttctttgcaaatagtgatatgttttttaatgtgtggattatgaaggaat 33020334  T
Q  319 atggaaataaaaagtcttggact 341  Q
    |||||||||||||||||||||||    
T  33020335 atggaaataaaaagtcttggact 33020357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 33023912 - 33024013
Alignment:
Q  27 gttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgttaatt 126  Q
    ||||||||||||| |||  |||| ||| ||||||| ||| |||||||||||  |||| |||||  | | || ||||||||||||||| ||| ||||||||    
T  33023912 gttcatactttggatacgaatacatggtgaaggatgccaaacttcccatattttggctcgttttgtgggttgggaatatttgtgagtcgcaatgttaatt 33024011  T
Q  127 gg 128  Q
    ||    
T  33024012 gg 33024013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 34570522 - 34570484
Alignment:
Q  295 tggatgtttgggttatgaagcaatatggaaataaaaagt 333  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  34570522 tggatgtttgggttatggaggaatatggaaataaaaagt 34570484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 36577366 - 36577408
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttgga 339  Q
    ||||||||| |||||||| |||||||||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttgga 36577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 1867 - 2187
Alignment:
Q  18 gaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggca 117  Q
    ||||| ||||||||||||||||||||  || |||||| || |||||  ||||||||||||| | | |||||   | | |  ||||||||||||| |||||    
T  1867 gaagttagtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggca 1966  T
Q  118 ctgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattt 217  Q
     |||||||||| || | || ||   ||||| |||||| ||||||||||||||||||||||||  ||| ||||  ||||||| ||||| ||  ||  || |    
T  1967 atgttaattggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttgacgaaagagtcatatcaaaagcttttgccacctaatat 2066  T
Q  218 tgagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaa 317  Q
     |||| ||||| || ||  |   ||||| ||||||| | |||||||||||||||||||| ||| |||||| |||||||| ||||||||| ||||||| ||    
T  2067 ggagatggatcattggacga---ctttgggggttttaaaggattgcttgtgcatctttgcaagtaatgatgtgtttttgaatgtttgggctatgaaggaa 2163  T
Q  318 tatggaaataaaaagtcttggact 341  Q
    |||||||||  | |||||||||||    
T  2164 tatggaaatgtagagtcttggact 2187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 4362 - 4682
Alignment:
Q  18 gaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggca 117  Q
    ||||| ||||||||||||||||||||  || |||||| || |||||  ||||||||||||| | | |||||   | | |  ||||||||||||| |||||    
T  4362 gaagttagtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggca 4461  T
Q  118 ctgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattt 217  Q
     |||||||||| || | || ||   ||||| |||||| ||||||||||||||||||||||||  ||| ||||  ||||||| ||||| ||  ||  || |    
T  4462 atgttaattggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttgacgaaagagtcatatcaaaagcttttgccacctaatat 4561  T
Q  218 tgagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaa 317  Q
     |||| ||||| || ||  |   ||||| ||||||| | |||||||||||||||||||| ||| |||||| |||||||| ||||||||| ||||||| ||    
T  4562 ggagatggatcattggacga---ctttgggggttttaaaggattgcttgtgcatctttgcaagtaatgatgtgtttttgaatgtttgggctatgaaggaa 4658  T
Q  318 tatggaaataaaaagtcttggact 341  Q
    |||||||||  | |||||||||||    
T  4659 tatggaaatgtagagtcttggact 4682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 341
Target Start/End: Complemental strand, 24417804 - 24417493
Alignment:
Q  24 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgtta 123  Q
    |||||||||||  ||||||||||| ||||||||| ||||| |||||||||||||  | ||| |||  |||| || ||||||||||||||||||||| |||    
T  24417804 agtgttcataccctgggtacagattcttggagaacgatacaagacttcccatattctcgccagttacatcggttgggaatatttgtgagtggcactatta 24417705  T
Q  124 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaa 223  Q
    ||||| ||  | | ||| |||   ||||||| | | |||||||||||||||||||||| || ||||  ||| ||  |||| |||||||  |||| ||| |    
T  24417704 attggttggtggtagacgatg---gttcttcgtttttcattgtttctcttgatttggaaaatgagtcatataaacggcttgcgctgcctaatttggagga 24417608  T
Q  224 ggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatgga 323  Q
     ||| |||| | |||   |||| |||||||||||||||| ||||||||| ||  ||    |||  |||||||  |||||||| |||||||  ||||||||    
T  24417607 tgattgtttcacaag---tttgggggttttgagggattgtttgtgcatcattacaaccggtgacgtgtttttaaatgtttggattatgaaagaatatgga 24417511  T
Q  324 aataaaaagtcttggact 341  Q
    |||||| | |||||||||    
T  24417510 aataaagaatcttggact 24417493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 20292946 - 20293039
Alignment:
Q  248 ggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||||||||||| |||||  | |||| ||  ||||||||||||| |||||||| ||||||||| |||| |||||||||||    
T  20292946 ggttttgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtttggattatgaaggaatatggaattaaagagtcttggact 20293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 20301394 - 20301487
Alignment:
Q  248 ggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||||||||||| |||||  | |||| ||  ||||||||||||| |||||||| |||||| || |||| |||||||||||    
T  20301394 ggttttgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtttggattatgaaggaatatgcaattaaagagtcttggact 20301487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 20305807 - 20305900
Alignment:
Q  248 ggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||||||||||| |||||  | |||| ||  ||||||||| ||| |||||||| ||||||||| |||| |||||||||||    
T  20305807 ggttttgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtctggattatgaaggaatatggaattaaagagtcttggact 20305900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 20310211 - 20310304
Alignment:
Q  248 ggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||||||||||| |||||  | |||| ||  ||||||||| ||| |||||||| ||||||||| |||| |||||||||||    
T  20310211 ggttttgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtctggattatgaaggaatatggaattaaagagtcttggact 20310304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 11081813 - 11081857
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||| | |||||||||||| |||||||||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggact 11081857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 23766913 - 23766869
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||| |||||||  |||||||||||||| |||||||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggact 23766869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 23816761 - 23816717
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||| |||||||  |||||||||||||| |||||||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggact 23816717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 89103 - 89187
Alignment:
Q  257 ggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||||  ||| | |||||| ||||| ||| |||||||||||||| |||||||||||||| |||||||||||    
T  89103 ggattgcttgtgcatctttacaagtagtgatatattttttgatatttgggttatgaaggaatatggaaataaagagtcttggact 89187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 88876 - 88971
Alignment:
Q  33 actttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgttaattgg 128  Q
    ||||| ||||| |||  ||||||||| |||  ||||||||||||| |||| || ||  ||  ||  ||||||||||||||||||||||||||||||    
T  88876 actttaggtactgattattggagaagaataaaagacttcccatatgatggtcccttacatgaatcgggaatatttgtgagtggcactgttaattgg 88971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 2456210 - 2456293
Alignment:
Q  258 gattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||| |||| ||    ||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||    
T  2456210 gattgcttgtgcatttttgcaaattgtgatatgttttgggatgtttgggttatgaaggaatatggaaataaagactcttggact 2456293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 341
Target Start/End: Original strand, 13498179 - 13498268
Alignment:
Q  252 ttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||| ||||||||||||||| |||  |   |||||||| ||| ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  13498179 ttgaaggattgcttgtgcatattttcacataatgatatctttgtggatgtttggattatgaaggaatatggaaataaagagtcttggact 13498268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 2476590 - 2476678
Alignment:
Q  253 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||| |||| || |   | |||||||||| ||||||||||| ||||||| || |||||||||||| |||||||||||    
T  2476590 tgagggattgcttgtgtatctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggact 2476678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 7430627 - 7430543
Alignment:
Q  257 ggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||||| |||   | ||  |||||||||||||||| |||||||| | ||||||||||||||||||| ||||    
T  7430627 ggattgcttgtgcatctttgcaagttgtcatgggtttttggatgtttggattatgaagaagtatggaaataaaaagtcttagact 7430543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 771589 - 771506
Alignment:
Q  258 gattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||| |||| ||    ||||||||||| ||||||||||||||||||| |||||||||||| | | |||||||||    
T  771589 gattgcttgtgcatttttgcaaattgtgatatgttttgggatgtttgggttatgaaggaatatggaaatacagactcttggact 771506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 43991949 - 43992003
Alignment:
Q  286 atatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggac 340  Q
    |||||||||||||||||||| |||||||| |||||||||||| | ||||||||||    
T  43991949 atatgtttttggatgtttggattatgaaggaatatggaaatatagagtcttggac 43992003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 2631344 - 2631401
Alignment:
Q  284 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||||||| |||||||| |||||||| ||||||||||| || |||||||||||    
T  2631344 tgatatgtttttgaatgtttggattatgaaggaatatggaaatcaagagtcttggact 2631401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 9608408 - 9608351
Alignment:
Q  284 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||| |||||||||||||||||| |||||||||||| | | |||||||||    
T  9608408 tgatatgttttttgatgtttgggttatgaaggaatatggaaatatagattcttggact 9608351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 37753437 - 37753352
Alignment:
Q  256 gggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||| | |||||||||||| ||| |||||  ||||| ||||||||||| ||||| || |||||||||| ||| |||||||||||    
T  37753437 gggattacctgtgcatctttgcaagtaatgaattgtttatggatgtttggattatggaggaatatggaaagaaagagtcttggact 37753352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 3754600 - 3754644
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||| |||||||||||||| |||||||||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggact 3754644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 763748 - 763705
Alignment:
Q  161 cattgtttctcttgatttggagaaggagttgtatcaaacgcttt 204  Q
    ||||||||||||||||||||||||||||| |||||||| |||||    
T  763748 cattgtttctcttgatttggagaaggagtcgtatcaaaagcttt 763705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 9585322 - 9585279
Alignment:
Q  161 cattgtttctcttgatttggagaaggagttgtatcaaacgcttt 204  Q
    ||||||||||||||||||||||||||||| |||||||| |||||    
T  9585322 cattgtttctcttgatttggagaaggagtcgtatcaaaagcttt 9585279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 7324495 - 7324438
Alignment:
Q  284 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||| ||||||||||||| |||||||| | || ||||||||| |||||||||||    
T  7324495 tgatatgtctttggatgtttggattatgaaggactacggaaataaagagtcttggact 7324438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 9608683 - 9608626
Alignment:
Q  18 gaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccat 75  Q
    ||||| ||||||||||||||||| || |||  |||||||||||||| |||||||||||    
T  9608683 gaagttagtgttcatactttgggcactgattattggagaaggatacaagacttcccat 9608626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 44001473 - 44001542
Alignment:
Q  155 ctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaag 224  Q
    ||||| |||||||||||||||| | || |||||||  ||||||  |||||||||||| ||||||||||||    
T  44001473 ctgtgacattgtttctcttgatcttgaaaaggagtcatatcaacagctttcgctgcctgattttgagaag 44001542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 771810 - 771770
Alignment:
Q  37 tgggtacagatacttggagaaggataccagacttcccatat 77  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  771810 tgggtacagattcttggagaaggatacaagacttcccatat 771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 783989 - 783949
Alignment:
Q  158 tgtcattgtttctcttgatttggagaaggagttgtatcaaa 198  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  783989 tgtcattgtttctcttgatttggagaatgagtcgtatcaaa 783949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 803269 - 803225
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||  |||||||||||||| |||||||||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggact 803225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 4142185 - 4142141
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggact 4142141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 4157995 - 4157951
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggact 4157951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 9594719 - 9594631
Alignment:
Q  253 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||||||||||  |||||| ||  | ||||||||||||| |||||||| |||||||  | || |||||| || |||||||||||    
T  9594719 tgagggattgcttgtgtgtctttgaaactagtgatatgtttttgaatgtttggattatgaataagtacggaaatgaagagtcttggact 9594631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 997578 - 997620
Alignment:
Q  299 tgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||| |||||| |||||||||||||| |||||||||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggact 997620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 1013968 - 1014010
Alignment:
Q  299 tgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||| |||||| |||||||||||||| |||||||||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggact 1014010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 2696783 - 2696741
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttgga 339  Q
    ||||||||| |||||||| |||||||||||||| |||||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttgga 2696741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 9587372 - 9587322
Alignment:
Q  161 cattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 211  Q
    |||||||||||||||||||||||| |||| ||||||||  |||| ||||||    
T  9587372 cattgtttctcttgatttggagaacgagtcgtatcaaaatcttttgctgcc 9587322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 754673 - 754616
Alignment:
Q  284 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||| ||||||||||| |||||||| | |||||| || || |||||||||||    
T  754673 tgatatgtttatggatgtttggattatgaaggagtatggagatcaagagtcttggact 754616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 784123 - 784070
Alignment:
Q  24 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatat 77  Q
    |||||| ||||||||||||| ||| ||||||| ||||| | |||||||||||||    
T  784123 agtgtttatactttgggtaccgattcttggaggaggatccaagacttcccatat 784070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 2459277 - 2459318
Alignment:
Q  299 tgtttgggttatgaagcaatatggaaataaaaagtcttggac 340  Q
    ||||||| |||||||| |||||||||||||| ||||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggac 2459318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 2644458 - 2644369
Alignment:
Q  252 ttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||  |||||| ||  | ||||   | ||||||||||||| |||||||| | ||||||||| || |||||||||||    
T  2644458 ttgagggattgcttgtgtgtctttgcaactagtgatgaatatttggatgtttggattatgaaggagtatggaaatcaagagtcttggact 2644369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Complemental strand, 7430681 - 7430652
Alignment:
Q  158 tgtcattgtttctcttgatttggagaagga 187  Q
    ||||||||||||||||||||||||||||||    
T  7430681 tgtcattgtttctcttgatttggagaagga 7430652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 7443236 - 7443203
Alignment:
Q  98 tggaatatttgtgagtggcactgttaattggatg 131  Q
    ||||||||||||| ||||||||||||||||||||    
T  7443236 tggaatatttgtgggtggcactgttaattggatg 7443203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 9587512 - 9587459
Alignment:
Q  24 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatat 77  Q
    |||||| |||||||||||||  |||||||||| ||||| | |||||||||||||    
T  9587512 agtgtttatactttgggtaccaatacttggaggaggatccaagacttcccatat 9587459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 43991813 - 43991870
Alignment:
Q  147 agttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgcttt 204  Q
    ||||| || |||| ||||||||||||||||||||||| |||||  ||||||| |||||    
T  43991813 agttcctcttgtgccattgtttctcttgatttggagacggagtcttatcaaaagcttt 43991870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 783862 - 783806
Alignment:
Q  285 gatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||| || ||||||||||| |||||||| |||||||||||| |||| | ||||||    
T  783862 gatatgcttgtggatgtttggattatgaaggaatatggaaatacaaagccatggact 783806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 968671 - 968715
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||||||| || ||||||||||| |||| ||||||    
T  968671 gatgtttgggttatgaaggaacatggaaataaagagtcatggact 968715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 1437986 - 1438037
Alignment:
Q  287 tatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttgga 339  Q
    ||||||| ||||||||||| |||||||| |||||||||||||| | |||||||    
T  1437986 tatgtttctggatgtttgg-ttatgaaggaatatggaaataaagactcttgga 1438037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 2659247 - 2659159
Alignment:
Q  253 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||||||||||  |||||| ||| | ||||   | || |||||||||| |||||||| | ||||||||| || |||||||||||    
T  2659247 tgagggattgcttgtgtgtctttgcaagtagtgatgaatattgggatgtttggattatgaaggagtatggaaatcaagagtcttggact 2659159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 2678450 - 2678406
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||||||||||| ||||||||||| ||| |||| ||||||    
T  2678450 gatgtttgggttatgaaacaatatggaaaaaaagagtcatggact 2678406  T

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Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 7334334 - 7334246
Alignment:
Q  253 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||||||||||  ||||||  || | |||||| | || |||||||||| | |||||| | || ||||||||| |||||||||||    
T  7334334 tgagggattgcttgtgtgtctttgccagtagtgatatatattgggatgtttggatcatgaaggactacggaaataaagagtcttggact 7334246  T

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Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 9562044 - 9561992
Alignment:
Q  289 tgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||||||||||| |||||||  | ||||||||| || |||||||||||    
T  9562044 tgtttttggatgtttggattatgaatgagtatggaaatcaagagtcttggact 9561992  T

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Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 9565924 - 9565836
Alignment:
Q  253 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||| |||||||||  |||||| ||| | |||||||| | ||||||||||| |||||||| | || ||| || || |||||||||||    
T  9565924 tgaggggttgcttgtgtgtctttgcaagtagtgatatgtatatggatgtttggattatgaaggagtacggagatcaagagtcttggact 9565836  T

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Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 9587249 - 9587193
Alignment:
Q  284 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggac 340  Q
    ||||||| || |||| |||||| |||||||| |||||||||||||| || |||||||    
T  9587249 tgatatgcttgtggaggtttggattatgaaggaatatggaaataaagagccttggac 9587193  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 27755555 - 27755604
Alignment:
Q  162 attgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 211  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  27755555 attgtttctcttgatttggagaaggagttgtatgaaaagcttgcgctgcc 27755604  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 39298967 - 39299021
Alignment:
Q  287 tatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    ||||||||| |||||||||||| ||||| ||| |||||||||| |||| ||||||    
T  39298967 tatgttttttgatgtttgggttttgaaggaatgtggaaataaagagtcctggact 39299021  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 3927063 - 3927103
Alignment:
Q  301 tttgggttatgaagcaatatggaaataaaaagtcttggact 341  Q
    |||||||||||||| | |||||||||||||| |||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggact 3927103  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 51854806 - 51854844
Alignment:
Q  159 gtcattgtttctcttgatttggagaaggagttgtatcaa 197  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  51854806 gtcattgtttctcttgatttggagaatgggttgtatcaa 51854844  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 51858465 - 51858503
Alignment:
Q  159 gtcattgtttctcttgatttggagaaggagttgtatcaa 197  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  51858465 gtcattgtttctcttgatttggagaatgagttgtgtcaa 51858503  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  297 gatgtttgggttatgaagcaatatggaaataaaaagtcttgg 338  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 51829632 - 51829677
Alignment:
Q  159 gtcattgtttctcttgatttggagaaggagttgtatcaaacgcttt 204  Q
    |||||||||||| |||||||  ||||||||| ||||||||||||||    
T  51829632 gtcattgtttcttttgatttacagaaggagtcgtatcaaacgcttt 51829677  T

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