View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16926_low_9 (Length: 313)
Name: NF16926_low_9
Description: NF16926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16926_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 9729283 - 9729009
Alignment:
| Q |
18 |
gtaagtaacatcaacctttgtacacataactttcaatagtaacatgttacatattatgacatgtaacatgtgtcatgcatgtgccatatttttatacatg |
117 |
Q |
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| T |
9729283 |
gtaagtaacatcaacctttgtacacataactttcaatagtaacatgttacatattatgacatgtcacatgtgtcatgcatgtgccatatttttatacatg |
9729184 |
T |
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| Q |
118 |
cagggaatttcgcaacatggtaaagaagattttcatttgttcaaatgaggaattaaagaaaatgaaatgcaagttacctaattcttcattagagattgaa |
217 |
Q |
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| T |
9729183 |
cagggaattttgcaacatggtaaagaagattttcatttgttcaaatgaggaattaaagaaaatgaaatgcaagttacctaattcttcattagagattgaa |
9729084 |
T |
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| Q |
218 |
gagacattgttgagtctagattcacagaatagggatgagaatcaacaaattcatgtgacttaacaaacatgtcac |
292 |
Q |
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| T |
9729083 |
gagacattgttgagtctagattcacagaatagggatgagaatcaacaaactcatgtgacttaacaaacatgtcac |
9729009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 7756194 - 7756099
Alignment:
| Q |
129 |
gcaacatggtaaagaagattttcatttgttcaaatgaggaattaaagaaaatgaaatgcaagttacctaattcttcattagagattgaagagacatt |
225 |
Q |
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| T |
7756194 |
gcaacatggtaaagaagattttcatttgttcaaaa-atgaattaaagaaaattaaatgcaagctacctaattcttcatcagagattgaagagacatt |
7756099 |
T |
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