View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16927_high_7 (Length: 378)
Name: NF16927_high_7
Description: NF16927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16927_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 356
Target Start/End: Original strand, 1067016 - 1067377
Alignment:
| Q |
12 |
aatactcaaggtctcaagcaacatagatacattatatagcagactccaaatcacaaagtgacaccaagctattaaaaccatcatgtctcgaca------- |
104 |
Q |
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| T |
1067016 |
aatactcaaggtctcaagcaacatagatacattatatagcagactccaaatcacaaagtgacaccaaactattaaaaccatcatgtctcgacaatggttg |
1067115 |
T |
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| Q |
105 |
----------tcgccaaaacgaaacataacattgtttaataaagaacttcaatggagtaaatttccaaccactatacatctgaaatttcatgaaaaataa |
194 |
Q |
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| T |
1067116 |
ctacaaaccatcgccaaaacgaaacataacattgtttaataaagaacttcaatggaataaatttccaaccactatacatctgaaatttcatgaaaaataa |
1067215 |
T |
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| Q |
195 |
ccagacaatggacagtaacaaaactaaactcaatcactatgaaacactaatatagatacgaacatatcggacaagacactattgctatcaaattgactcc |
294 |
Q |
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| T |
1067216 |
ccagataatggacagtaacaaaactaaactcaatcactatgaaacactaatatagatacgaacatatcggacaagacactattgctatcaaattgactcc |
1067315 |
T |
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| Q |
295 |
cataataatttgagaaaatgacatagttgcttgtgacctaatgtgtcacactgtcagtgtcg |
356 |
Q |
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| T |
1067316 |
cataataatttgagaaaatgacatagttgcttgtgacccaatgtgtcagactgtcagtgtcg |
1067377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 1067549 - 1067610
Alignment:
| Q |
152 |
taaatttccaaccactatacatctgaaatttcatgaaaaataaccagacaatggacagtaac |
213 |
Q |
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| T |
1067549 |
taaatttccaatcacggtacacctgaaatttcatgaaaaatagccagacaatggacagtaac |
1067610 |
T |
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