View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16927_low_2 (Length: 717)

Name: NF16927_low_2
Description: NF16927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16927_low_2
NF16927_low_2
[»] chr1 (1 HSPs)
chr1 (20-703)||(46767293-46767976)


Alignment Details
Target: chr1 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 20 - 703
Target Start/End: Complemental strand, 46767976 - 46767293
Alignment:
Q  20 tcaataaccaaacacaacaaattaaaattcataactgacgtaaattctttcgacaaatttctcatgcgcattgcacgcgttctcaagttcacacgcattt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  46767976 tcaataaccaaacacaacaaattaaaattcataactgacgtaaattctttcgacaaatttctcacgcgcattgcacgggttctcaagttcacacgcattt 46767877  T
Q  120 gagtggtatgaagtggctctctagaaggcatacagacaaagtagttgaactgttgagatctcatgaatgaatgattcttaactgtgacatgagcaaaaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46767876 gagtggtatgaagtggctctctagaaggcatacagacaaagtagttgaactgttgagatctcatgaatgaatgattcttaactgtgacatgagcaaaaat 46767777  T
Q  220 cagccacaaagttgaataggaactagtattactcaaataatgatttagcattagtctttttctgcaactgttattgtttctacttttcttagggatctta 319  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46767776 cagccacaaaattgaataggaactagtattactcaaataatgatttagcattagtctttttctgcaactgttattgtttctacttttcttagggatctta 46767677  T
Q  320 aatagatacacacaaaacaacaaaacagatgataatgtaaagtagctaaagtccacctagtcaaaagtaaacaccagcagcagcaattgaaaggaatgaa 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46767676 aatagatacacacaaaacaacaaaacagatgataatgtaaagtagctaaagtccacctagtcaaaagtaaacaccagcagcagcaattgaaaggaatgta 46767577  T
Q  420 aatagcatcttcaaagagttgtagggccttattgtattagagcctccaacaattattattcccgccaaatttgcatgcctcttttggtttgttaaatact 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46767576 aatagcatcttcaaagagttgtagggccttattgtattagagcctccaacaattattattcccgccaaaattgcatgcctcttttggtttgttaaatact 46767477  T
Q  520 caaatactgttccttattagtaaaaagaagagctttactatttgattttgatgtcaaaaccaactttatcagtacaaaaattatcatgcagacatagaca 619  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46767476 cgaatactgttccttattagtaaaaagaagagctttactatttgattttgatgtcaaaaccaactttatcagtacaaaaattatcatgcagacatagaca 46767377  T
Q  620 gagaactcagcacaagagagtttttggaatctatataatgaacttcaatttcttttttgttccttttctttactcaattatatt 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46767376 gagaactcagcacaagagagtttttggaatctatataatgaacttcaatttcttttttgttccttttctttactcaattatatt 46767293  T

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