View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16927_low_5 (Length: 448)
Name: NF16927_low_5
Description: NF16927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16927_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 3217888 - 3217461
Alignment:
| Q |
16 |
gtagtaacagccactgtcccattatatgtaactatgttactagcatacatttgtgttaaatggtggaaacttttcacaccagatcaatgtgcaggcataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3217888 |
gtagtaacagccactgtcccattatatgtaactatgttactagcatacatttgtgttaaatggtggaaacttttcacaccagatcaatgtgcaggcataa |
3217789 |
T |
|
| Q |
116 |
acaaatttgtagcaaatttttcagttccattgttatcatttcaagtgatatcttcaaataacatttacaaaatgagtcttaaacttatatatgcagattg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3217788 |
acaaatttgtagcaaatttttcagttccattgttatcatttcaagtgatatcttcaaataacatttacaaaatgagtcttaaacttatatatgcagattg |
3217689 |
T |
|
| Q |
216 |
tgttcaaaaatttcttgcatttttagtcttgattgttattattaagattagtgatattagaggaggtttgaaatggattataactggtctttcattatca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3217688 |
tgttcaaaaatttcttgcatttttagtcttgattgttattattaagattagtgatattagaggaggtttgaaatggattataactggtctttcattatca |
3217589 |
T |
|
| Q |
316 |
acacttcctaatactttgatccttggaattccactcatgaaggctatgtataaagatgaatctgattttctactacctcagattattttcttgcaaagta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3217588 |
acacttcctaatactttgatccttggaattccactcatgaaggctatgtataaagatgaatctgattttctactacctcagattattttcttgcaaagta |
3217489 |
T |
|
| Q |
416 |
tgatttggtataatttgcctttgcttct |
443 |
Q |
| |
|
|||||||||||||||||| |||| |||| |
|
|
| T |
3217488 |
tgatttggtataatttgcttttgtttct |
3217461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 28 - 433
Target Start/End: Complemental strand, 2036136 - 2035734
Alignment:
| Q |
28 |
actgtcccattatatgtaactatgttactagcatacatttgtgttaaatggtggaaacttttcacaccagatcaatgtgcaggcataaacaaatttgtag |
127 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| || | | || ||||||| || | ||||||| ||| |||||| |||| |||||||||||||| | |
|
|
| T |
2036136 |
actgtcccattatatgtaacaatgatactagcctatgtctcagtgaaatggtttaagatcttcacacaagaacaatgttcaggaataaacaaatttgttg |
2036037 |
T |
|
| Q |
128 |
caaatttttcagttccattgttatcatttcaagtgatatcttcaaataacatttacaaaatgagtcttaaacttatatatgcagattgtgttcaaaaatt |
227 |
Q |
| |
|
|||| || ||| | || | |||||||||||||| || ||||| || || || ||||||||||| || ||||| || | | | |||| |||| ||| | |
|
|
| T |
2036036 |
caaaattctcaatccctcttttatcatttcaagtcatttcttccaacaatatctacaaaatgagcctaaaactaatgttttctgatttcattcagaaact |
2035937 |
T |
|
| Q |
228 |
tcttgcatttttagtcttgattgttattattaagattagtgatattagaggaggtttgaaatggattataactggtctttcattatcaacacttcctaat |
327 |
Q |
| |
|
|||||||||| | |||| | | |||||||||||||||| || ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2035936 |
tcttgcatttgttctcttaacagcaattattaagattagtggtaa---aggtggtttgaaatggattataactggtttttcattatcaacacttcctaat |
2035840 |
T |
|
| Q |
328 |
actttgatccttggaattccactcatgaaggctatgtataaagatgaatctgattttc-tactacctcagattattttcttgcaaagtatgatttggtat |
426 |
Q |
| |
|
|||||||| |||||||||||| | | || || |||||||| |||||| || ||| || | || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
2035839 |
actttgattcttggaattccattgttaaaagcaatgtataaggatgaagct-attgtcttgttagctcagattgttttcttgcaaagtatgatttggtac |
2035741 |
T |
|
| Q |
427 |
aatttgc |
433 |
Q |
| |
|
||||||| |
|
|
| T |
2035740 |
aatttgc |
2035734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 34970770 - 34970841
Alignment:
| Q |
73 |
aaatggtggaaacttttcacaccagatcaatgtgcaggcataaacaaatttgtagcaaatttttcagttcca |
144 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
34970770 |
aaatggtggaaaatcttcacaccagatcaatgttcaggcataaaccgttttgtagcactttttgcagttcca |
34970841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University