View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16927_low_6 (Length: 420)
Name: NF16927_low_6
Description: NF16927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16927_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 36375390 - 36374991
Alignment:
| Q |
1 |
ttttaatattattataaaaacatgatttatttaatagttttgaaactgtatactgctgctggttttggtcaagtgcacactgcttctaatccaaagtatt |
100 |
Q |
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| T |
36375390 |
ttttaatattattataaaaacatgatttatttaatagttttgaaactgtatactgctgctggttttggtcaagtgcacactgcttctaatccaaaatatt |
36375291 |
T |
|
| Q |
101 |
tggaccccactacaacattctcataacctcctaacccatttttctcaatctccgatttttctttttctcaaggcaagtagtttcgtcatggattggttaa |
200 |
Q |
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| T |
36375290 |
tggactgcactacaacattctcataacctcctaacccatttttctcaatctccgatttttctttttctcaaggcaagtagtttcgtcatggattggttaa |
36375191 |
T |
|
| Q |
201 |
tacctatcgtcaaaaattacaacaaacacatatatatattttttaaagttttcagaaaaatacaccaaaattatttaggaaaatgttgaagagaccgtca |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36375190 |
tacctatcgtcaaaaattacaacaaacatatatatat-ttttttaaagttttcagaaaaatacaccaaaattatttagaaaaatgttgaagagaccgtca |
36375092 |
T |
|
| Q |
301 |
ttgtataatttattatacacgatcttaacaataattctcagacatctactgctaccactagctcccaacatgttcaatctagcatatgagaagcatagtt |
400 |
Q |
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| T |
36375091 |
ttg-ataatttattatacacgatcttaacaataattctcagacatctactgctaccactagctcccaacatgttcaatctagcataagagaagcatagtt |
36374993 |
T |
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