View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16927_low_9 (Length: 315)

Name: NF16927_low_9
Description: NF16927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16927_low_9
NF16927_low_9
[»] chr2 (8 HSPs)
chr2 (18-305)||(35961661-35961948)
chr2 (18-305)||(35954669-35954957)
chr2 (44-215)||(29109177-29109348)
chr2 (82-215)||(3919870-3920003)
chr2 (95-215)||(5526268-5526387)
chr2 (106-215)||(27866673-27866782)
chr2 (89-212)||(37630375-37630498)
chr2 (99-220)||(3690102-3690228)
[»] chr7 (5 HSPs)
chr7 (44-214)||(48070614-48070784)
chr7 (50-172)||(25545265-25545387)
chr7 (84-215)||(12471024-12471155)
chr7 (132-215)||(12471749-12471832)
chr7 (81-125)||(21379174-21379218)
[»] chr6 (5 HSPs)
chr6 (90-213)||(7176496-7176619)
chr6 (44-202)||(23301411-23301569)
chr6 (104-211)||(11846300-11846407)
chr6 (44-202)||(23300425-23300583)
chr6 (131-215)||(9826824-9826908)
[»] chr3 (5 HSPs)
chr3 (121-227)||(44285637-44285743)
chr3 (50-215)||(44471023-44471188)
chr3 (121-215)||(28550520-28550614)
chr3 (66-208)||(12937750-12937892)
chr3 (41-202)||(11503354-11503515)
[»] chr1 (4 HSPs)
chr1 (44-214)||(8414594-8414764)
chr1 (105-215)||(11911646-11911756)
chr1 (93-202)||(513002-513111)
chr1 (49-145)||(4407855-4407951)
[»] chr8 (4 HSPs)
chr8 (82-215)||(16570877-16571009)
chr8 (104-215)||(3767671-3767782)
chr8 (52-211)||(8266022-8266181)
chr8 (121-202)||(34760834-34760915)
[»] chr4 (2 HSPs)
chr4 (105-213)||(42141309-42141417)
chr4 (50-215)||(53393170-53393335)
[»] chr5 (4 HSPs)
chr5 (63-156)||(1498268-1498361)
chr5 (43-143)||(16746627-16746727)
chr5 (82-202)||(7239307-7239432)
chr5 (82-202)||(7244483-7244608)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 35961948 - 35961661
Alignment:
Q  18 ctttttgctggaatgattatctcacatagggatgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattcta 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35961948 ctttttgctggaatgatgatctcacatagggatgtaagcggttcagacaaaatcgatgtaactgaaaatttaaaccgaaccaaattgaaaaagtattcta 35961849  T
Q  118 ccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgatgtt 217  Q
    || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  35961848 ccttgttttgtttggttcaaaatcgaattgaaccaaccttaatcgatctaatttgattcggttctcagtttttgattttgagatctaaagaaccaatgtt 35961749  T
Q  218 aacatcactctttatttactaattatgagttaactctgtcaaaaaagtccatgtggtactccgaatgttatccacatgtgcacctttg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35961748 aacatcactctttatttactaattatgagttaactctgtcaaaaacgtccatgtggtactccgaatgttatccacatgtgcacctttg 35961661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 35954957 - 35954669
Alignment:
Q  18 ctttttgctggaatgattatctcacatagggatgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattcta 117  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||| ||||| |||||||||| | |    
T  35954957 cttttcgctagaatgatgatctcacatagggatgtaagcggttcaaacaaaatcgacgtaaccaaaaatttaaaccgaatcaaatcgaaaaagtatccga 35954858  T
Q  118 ccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgatgtt 217  Q
    || |||||||||||||| |||| |||||||||||||||| | ||||||||||||| ||   |||||||||||||||||||||||| |||||| | |||||    
T  35954857 ccttgttttgtttggtttaaaatcgaactgaaccaacctaactcgatctaatttggtttggttctcagtttttgattttgagatccaaagaatcaatgtt 35954758  T
Q  218 aacatcactcttta-tttactaattatgagttaactctgtcaaaaaagtccatgtggtactccgaatgttatccacatgtgcacctttg 305  Q
    || || |||||||| |||||||||| ||| |||||||||||||||| ||||| |||  ||||||||  |||||||  |||||| |||||    
T  35954757 aaaattactctttattttactaattgtgacttaactctgtcaaaaatgtccacgtgacactccgaaatttatccatgtgtgcatctttg 35954669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 215
Target Start/End: Complemental strand, 29109348 - 29109177
Alignment:
Q  44 tagggatgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccga 143  Q
    ||||| |||||| ||||| |||||||  || | ||||||||||  ||||||||||||| ||||||| ||| | ||| ||||| |||  ||||||||||||    
T  29109348 taggggtgtaagtggttcggacaaaactgatgaaactgaaaatccaaaccgaaccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccga 29109249  T
Q  144 actgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgatg 215  Q
    || ||| |||||| || | ||||| |||| ||   ||||| |||||| ||||||||||| ||||||||||||    
T  29109248 accgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatccaaagaaccgatg 29109177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 3920003 - 3919870
Alignment:
Q  82 aaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttc 181  Q
    |||||| |||| ||| ||||  ||||||| |||| ||  ||||| ||||||||||||||||||| ||||||| || || ||||||| |||| ||   |||    
T  3920003 aaaattcaaactgaatcaaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaactaaaccgatctagtttggtttggttc 3919904  T
Q  182 tcagtttttgattttgagatctaaagaaccgatg 215  Q
    | | ||||| ||||||||||||||||||||||||    
T  3919903 ttaatttttaattttgagatctaaagaaccgatg 3919870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 5526268 - 5526387
Alignment:
Q  95 aaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgatt 194  Q
    |||||||  ||||| |||| | ||| ||||||||| |||||||||| |||| |||||||||| || ||||||| |||| |||  |||||||||||| |||    
T  5526268 aaccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactgaac-gaaccaacctaaaccgatctagtttggttcggttctcagtttttaatt 5526366  T
Q  195 ttgagatctaaagaaccgatg 215  Q
    |||||||| ||||||| ||||    
T  5526367 ttgagatccaaagaacagatg 5526387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 27866673 - 27866782
Alignment:
Q  106 aaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaa 205  Q
    |||||||| | ||| || || ||| |||||||||||||||||||||||| | ||| |||| | |||| |||  ||||| |||||| |||||||||||  |    
T  27866673 aaaagtatccgaccttgcttggttcggttcaaaaccgaactgaaccaacttaaattgatcgagtttggttcgattctcggtttttaattttgagatccca 27866772  T
Q  206 agaaccgatg 215  Q
    ||||||||||    
T  27866773 agaaccgatg 27866782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 37630375 - 37630498
Alignment:
Q  89 aaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagttt 188  Q
    |||||||||||||  ||||||||||   ||| || || ||||||||||||| ||| |  ||||||||| ||  |||||| |||| |||| ||||| ||||    
T  37630375 aaaccgaaccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaacctaaactgatctagtttggttcagttctcggttt 37630474  T
Q  189 ttgattttgagatctaaagaaccg 212  Q
    || ||||||||||| || ||||||    
T  37630475 ttaattttgagatccaatgaaccg 37630498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 3690228 - 3690102
Alignment:
Q  99 aaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaa-----ccttaatcgatctaatttgattcacttctcagtttttgat 193  Q
    |||| ||||||||||||  || |||| |||| |||||||||||||||| ||||||     ||| || ||||||| |||| |||  |||||  ||||| ||    
T  3690228 aaatcgaaaaagtattcgcccttgttatgttcggttcaaaaccgaactaaaccaaaccaacctaaaccgatctagtttggttcggttctcgatttttaat 3690129  T
Q  194 tttgagatctaaagaaccgatgttaac 220  Q
    |||||||||||| ||||||||| ||||    
T  3690128 tttgagatctaatgaaccgatgctaac 3690102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 48070614 - 48070784
Alignment:
Q  44 tagggatgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccga 143  Q
    ||||| |||||| ||||| |||||||||||   ||| |||||| |||||||||| |||   ||||| ||| | ||| |||||  ||||||||||||||||    
T  48070614 taggggtgtaagtggttcggacaaaatcgatcaaaccgaaaatctaaaccgaactaaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccga 48070713  T
Q  144 actgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgat 214  Q
    || |||| ||||| || ||||||| ||||||||  ||||| |||||| ||||||||||| |||||||||||    
T  48070714 accgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttgagatccaaagaaccgat 48070784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 25545387 - 25545265
Alignment:
Q  50 tgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaa 149  Q
    |||||| |||||||||||||||||   ||  ||||||| ||||||| | ||| | ||||||||||| ||| || || ||| |||||||||||||||| ||    
T  25545387 tgtaagtggttcagacaaaatcgataaaatcgaaaattcaaaccgagcaaaactaaaaaagtattcgaccttgattggttcggttcaaaaccgaactaaa 25545288  T
Q  150 ccaaccttaatcgatctaatttg 172  Q
    ||||||| || ||||||| ||||    
T  25545287 ccaacctaaaccgatctagtttg 25545265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 12471155 - 12471024
Alignment:
Q  84 aatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctc 183  Q
    |||| ||||||||| ||| |||||||||||   | ||||||| |||  |||||||| |||||  ||||||||| ||||| |||| |||  |||  |||||    
T  12471155 aattcaaaccgaacaaaactgaaaaagtatctgatcctgtttggttcagttcaaaatcgaacctaaccaacctaaatcggtctagtttagttcggttctc 12471056  T
Q  184 agtttttgattttgagatctaaagaaccgatg 215  Q
    ||||||| ||||||||||| ||| ||||||||    
T  12471055 agtttttaattttgagatccaaaaaaccgatg 12471024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 12471832 - 12471749
Alignment:
Q  132 gttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgatg 215  Q
    |||||||||||||| |||||||| | |||||||||| |||  |||  |||| ||||||| ||||||||||  |||||| |||||    
T  12471832 gttcaaaaccgaaccgaaccaacttaaatcgatctagtttagttcggttcttagtttttaattttgagattcaaagaatcgatg 12471749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 21379218 - 21379174
Alignment:
Q  81 gaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttt 125  Q
    ||||||| ||||||||| ||||||||||||||||| ||| |||||    
T  21379218 gaaaattcaaaccgaactaaattgaaaaagtattcgaccatgttt 21379174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 7176619 - 7176496
Alignment:
Q  90 aaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttt 189  Q
    |||||||||||   |||||||||| | ||| ||||| ||||||||||||| ||||| |||||||||| || ||||||| |||| |||  || ||||||||    
T  7176619 aaccgaaccaacccgaaaaagtatccaaccttgtttggtttggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggttcggttatcagtttt 7176520  T
Q  190 tgattttgagatctaaagaaccga 213  Q
    | ||||||||||| || |||||||    
T  7176519 ttattttgagatccaatgaaccga 7176496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 23301411 - 23301569
Alignment:
Q  44 tagggatgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccga 143  Q
    |||||||||||| ||||  | ||| ||||  | ||| ||||||| |||| ||||||||  ||||||  |||| ||| ||||| ||| |||||||||||||    
T  23301411 tagggatgtaagtggtttgggcaacatcgttgaaaccgaaaattcaaactgaaccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccga 23301510  T
Q  144 actgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatc 202  Q
    || |||||||||| ||  |||||| |||| |||  |||||||||||| |||||||||||    
T  23301511 accgaaccaacctaaactgatctagtttggttcggttctcagtttttaattttgagatc 23301569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 11846300 - 11846407
Alignment:
Q  104 gaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatct 203  Q
    ||||| |||| | ||| ||||| |||||||||||||||||||||||||||| | || ||||||| |||| |||  ||||| |||||| |||||||||||     
T  11846300 gaaaatgtatccgaccttgtttggtttggttcaaaaccgaactgaaccaacttaaaccgatctagtttggttcggttctcggtttttaattttgagatcc 11846399  T
Q  204 aaagaacc 211  Q
    || |||||    
T  11846400 aatgaacc 11846407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 23300425 - 23300583
Alignment:
Q  44 tagggatgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccga 143  Q
    |||||||||||| ||||  | ||| ||||  | ||| ||||||| |||||||||||||  ||||||| | || ||| ||||| ||| |||||||||| ||    
T  23300425 tagggatgtaagtggtttgggcaacatcgttgaaaccgaaaattcaaaccgaaccaaaccgaaaaagaaatcgaccttgtttggttcggttcaaaactga 23300524  T
Q  144 actgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatc 202  Q
    || |||||||||| ||  |||||| |||  |||  ||||| |||||| |||||||||||    
T  23300525 accgaaccaacctaaactgatctagtttagttcggttctcggtttttaattttgagatc 23300583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 9826824 - 9826908
Alignment:
Q  131 ggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgatg 215  Q
    |||| |||||||||| |||||||| | || ||||||| |||| |||  ||||| |||||| ||||||| ||| ||||||||||||    
T  9826824 ggttgaaaaccgaaccgaaccaacataaaccgatctagtttggttcgattctcggtttttaattttgaaatccaaagaaccgatg 9826908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 44285637 - 44285743
Alignment:
Q  121 tgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgatgttaac 220  Q
    ||||| ||| ||||||||||||||| |||||||||| ||||||| || |||| |||| ||||| |||||| ||||||| ||  |||||||| ||||||||    
T  44285637 tgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggttcagttctcggtttttaattttgaaattcaaagaacctatgttaac 44285736  T
Q  221 atcactc 227  Q
     ||||||    
T  44285737 ctcactc 44285743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 44471023 - 44471188
Alignment:
Q  50 tgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaa 149  Q
    |||||| ||||| ||||||| ||| | ||  ||||||  |||||||||||||  ||||| |||| | ||| ||||| ||| |||||||||||||||  ||    
T  44471023 tgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaaccaaa 44471122  T
Q  150 ccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgatg 215  Q
    |||| || || ||||||| |||| |||  ||||  |||||| ||||||| ||| ||||||||||||    
T  44471123 ccaatctaaaccgatctagtttggttcggttcttggtttttaattttgaaatccaaagaaccgatg 44471188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 28550520 - 28550614
Alignment:
Q  121 tgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgatg 215  Q
    ||||| ||| |||||||| |||||| |||||||| | ||  |||||| |||| |||  ||||| |||||| ||||||||||||||||||||||||    
T  28550520 tgtttggttcggttcaaatccgaaccgaaccaacttaaacggatctagtttggttcgattctcggtttttaattttgagatctaaagaaccgatg 28550614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 12937892 - 12937750
Alignment:
Q  66 aaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatc 165  Q
    |||||||| | ||| ||||||  ||||||||| |||| |||||||||||  |   ||||| ||||| || |||||||||| |||||||||| || |||||    
T  12937892 aaaatcgatgaaaccgaaaatccaaaccgaactaaatcgaaaaagtattagattttgtttggtttgattgaaaaccgaaccgaaccaacctaaaccgatc 12937793  T
Q  166 taatttgattcacttctcagtttttgattttgagatctaaaga 208  Q
     | |||| |||  |||||| ||||| || || ||||| |||||    
T  12937792 aattttggttcggttctcaatttttcatcttaagatccaaaga 12937750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 11503515 - 11503354
Alignment:
Q  41 acatagggatgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaac 140  Q
    |||||||| ||||||||||| ||| |||| ||| | |||||||| |  |||||||||||||   |||| |||| | ||| ||| | ||  ||||||||||    
T  11503515 acataggggtgtaagcggttaagataaaaccgatgaaactgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaac 11503416  T
Q  141 cgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatc 202  Q
    ||||| ||||||| |  || |||||| ||||| ||   |||||  ||||| |||||||||||    
T  11503415 cgaaccgaaccaatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatc 11503354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 8414764 - 8414594
Alignment:
Q  44 tagggatgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccga 143  Q
    |||||||||||| ||||| ||||||| ||| | ||||||||||  |||| |||| |||  |||||||||| | ||| ||||| |||||||||||||| ||    
T  8414764 tagggatgtaagtggttcggacaaaaccgatgaaactgaaaatccaaactgaacaaaaccgaaaaagtatccgaccttgtttggtttggttcaaaactga 8414665  T
Q  144 actgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgat 214  Q
    || |||   || | || | ||||| |||| |||  ||||| |||||| ||||||||||| |||||||||||    
T  8414664 accgaagacacataaaccaatctagtttggttctattctcggtttttaattttgagatccaaagaaccgat 8414594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 11911646 - 11911756
Alignment:
Q  105 aaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatcta 204  Q
    ||||||||| | ||| ||||| ||| ||||||||||||||| |||||||||| || ||||||| ||||||| | ||||  |||||| ||||||| |||      
T  11911646 aaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggtttttaattttgaaatccg 11911745  T
Q  205 aagaaccgatg 215  Q
    | |||||||||    
T  11911746 atgaaccgatg 11911756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 513002 - 513111
Alignment:
Q  93 cgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttga 192  Q
    |||||||||  |||||||||| | | | ||||| ||| ||||||||||| ||| |||||||||| || ||||||| ||||||||  |||| | ||||| |    
T  513002 cgaaccaaaccgaaaaagtatccaatcttgtttggttcggttcaaaaccaaaccgaaccaacctaaaccgatctagtttgattcgattcttaatttttaa 513101  T
Q  193 ttttgagatc 202  Q
    ||||||||||    
T  513102 ttttgagatc 513111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 4407951 - 4407855
Alignment:
Q  49 atgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaac 145  Q
    ||||||||||||  ||||||| ||||| |||  ||| |||||| |  ||||||| |||||||||||| ||  ||| | ||| |||||||||||||||    
T  4407951 atgtaagcggtttggacaaaaccgacgaaaccaaaagtttaaatcagaccaaatcgaaaaagtattcgacattgtctggttcggttcaaaaccgaac 4407855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 16571009 - 16570877
Alignment:
Q  82 aaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttc 181  Q
    |||||| |||||||||||||   ||||| ||| | ||| ||||| |||||||||||||||||||  ||||||||| || |||||||||||| ||   |||    
T  16571009 aaaattcaaaccgaaccaaaccaaaaaa-tatccaaccttgtttggtttggttcaaaaccgaaccaaaccaacctaaaccgatctaatttggttaggttc 16570911  T
Q  182 tcagtttttgattttgagatctaaagaaccgatg 215  Q
    ||  ||||| ||||||||||| ||||||||||||    
T  16570910 tcgatttttaattttgagatccaaagaaccgatg 16570877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 3767782 - 3767671
Alignment:
Q  104 gaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatct 203  Q
    |||||||||| | ||| ||||| ||| ||||||||||||||| ||||||| || || ||||||| |||| ||   ||||| |||||| |||||||||||     
T  3767782 gaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaatctaaaccgatctagtttggtttggttctcggttttttattttgagatcc 3767683  T
Q  204 aaagaaccgatg 215  Q
    || |||||||||    
T  3767682 aatgaaccgatg 3767671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 8266022 - 8266181
Alignment:
Q  52 taagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaacc 151  Q
    ||||| |||||||||||| | ||| ||||| ||||||||| |||||||||  |||||||||| | ||| | ||| |||| |||||||| | || ||||||    
T  8266022 taagcagttcagacaaaacctacgaaactggaaatttaaatcgaaccaaaccgaaaaagtatccaaccttatttggtttagttcaaaatcaaattgaacc 8266121  T
Q  152 aaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaacc 211  Q
    || || || ||   |  ||| ||||| ||||||| |||||||||||||||  ||||||||    
T  8266122 aatctaaaccgtcttgttttaattcaattctcagattttgattttgagatacaaagaacc 8266181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 34760915 - 34760834
Alignment:
Q  121 tgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatc 202  Q
    ||||| ||| ||||||||| ||||| |||||||||| || ||||||| |||| ||   ||||  ||||||||||||||||||    
T  34760915 tgtttggttcggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggtttggttcttggtttttgattttgagatc 34760834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 42141309 - 42141417
Alignment:
Q  105 aaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatcta 204  Q
    ||||| ||||| ||| | ||| ||| |||||||||||||||||||| ||||| |||||||||| |||| |||  ||||  |||||| ||||||||||| |    
T  42141309 aaaaaatattcgaccttctttggttcggttcaaaaccgaactgaacaaacctaaatcgatctactttggttcggttcttggtttttaattttgagatcca 42141408  T
Q  205 aagaaccga 213  Q
    |||||||||    
T  42141409 aagaaccga 42141417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 215
Target Start/End: Complemental strand, 53393335 - 53393170
Alignment:
Q  50 tgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaa 149  Q
    |||||| ||||| ||||||| ||| | ||| ||||||  |||||||||||||   ||||||||| | ||| ||||| ||| |||| ||||| |||| |||    
T  53393335 tgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccgaa 53393236  T
Q  150 ccaaccttaatcgatctaatttgattcacttctcagtttttgattttgagatctaaagaaccgatg 215  Q
    ||||||| || ||||||| |||| |||  ||||| |||| | | ||||| ||| || |||||||||    
T  53393235 ccaacctaaaccgatctagtttggttcggttctcggtttataactttgaaatccaatgaaccgatg 53393170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 1498361 - 1498268
Alignment:
Q  63 gacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccgaactgaaccaacct 156  Q
    ||||||| ||| | ||| ||||||  |||||||| |||| ||| ||| ||| | ||| ||||| ||| ||||||||||||||||||||||||||    
T  1498361 gacaaaaccgatgaaaccgaaaatccaaaccgaatcaaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacct 1498268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 16746727 - 16746627
Alignment:
Q  43 atagggatgtaagcggttcagacaaaatcgacgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccctgttttgtttggttcaaaaccg 142  Q
    ||||||||||||| ||||| ||||||| | ||| ||| |||| | ||||||||||||||| |||||| ||| | ||| ||||| ||| ||||  ||||||    
T  16746727 atagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16746628  T
Q  143 a 143  Q
    |    
T  16746627 a 16746627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 7239432 - 7239307
Alignment:
Q  82 aaaatttaaaccgaaccaaattgaaaaagtattctaccct-----gttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattc 176  Q
    |||||| ||| ||||||||| ||||||||||| | ||| |     |||| ||||||||||||||||||| |||||||| | ||||||  || |||| |||    
T  7239432 aaaattcaaaacgaaccaaactgaaaaagtatccgaccttattaggtttggtttggttcaaaaccgaaccgaaccaacttaaatcgagttagtttggttc 7239333  T
Q  177 acttctcagtttttgattttgagatc 202  Q
      |||| ||||||| ||||| |||||    
T  7239332 ggttcttagttttttattttaagatc 7239307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 7244608 - 7244483
Alignment:
Q  82 aaaatttaaaccgaaccaaattgaaaaagtattctaccct-----gttttgtttggttcaaaaccgaactgaaccaaccttaatcgatctaatttgattc 176  Q
    |||||| ||| ||||||||| ||||||||||| | ||| |     |||| ||||||||||||||||||| |||||||| | ||||||  || |||| |||    
T  7244608 aaaattcaaaacgaaccaaactgaaaaagtatccgaccttattaggtttggtttggttcaaaaccgaaccgaaccaacttaaatcgagttagtttggttc 7244509  T
Q  177 acttctcagtttttgattttgagatc 202  Q
      |||| ||||||| ||||| |||||    
T  7244508 ggttcttagttttttattttaagatc 7244483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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