View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_high_13 (Length: 250)
Name: NF16928_high_13
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_high_13 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 8919982 - 8919742
Alignment:
| Q |
10 |
ataatactattgacttccctaagtttctcaacctcatggccaggaagatgaaggacactgacctaaggaagagctgaaagaggctttgaaaagttttaat |
109 |
Q |
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| T |
8919982 |
ataatactattgacttccctaagtttctcaacctcatggccaggaagatgaaggacactgaactaaggaagagctgaaagaggctttgaaaagttttaat |
8919883 |
T |
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| Q |
110 |
gttaatgtaaataagaaccgataaatttatgttaagggtagtttagtttgtgaccatatttagtgatttgactgaaaatccaagttaaccaatctttgtt |
209 |
Q |
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| T |
8919882 |
gttaatgtaaataagaaccaataaatttatgttaagggtagtttagtttgtgaccatatttagtgatttgactgaaaatccaagttaaccaatctttgtt |
8919783 |
T |
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| Q |
210 |
gtgtattgagtaaaaactaaaaacataccactagatccttc |
250 |
Q |
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| T |
8919782 |
gtgtattgagtaaaaactaaaaacataccactagatccttc |
8919742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 8921365 - 8921288
Alignment:
| Q |
14 |
tactattgacttccctaagtttctcaacctcatggccaggaagatgaaggacactgac-ctaaggaagagctgaaaga |
90 |
Q |
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| T |
8921365 |
tactattgacttccccgagtttcttaacctcatggcaaggaagatgaaggacaccgactctgaggaggagctgaaaga |
8921288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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