View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_high_6 (Length: 357)
Name: NF16928_high_6
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 18801508 - 18801361
Alignment:
| Q |
12 |
aaaggggtgattgggagagaagcacaatggaagaggcgaaacggaatgaagatcaagaaatttatcaagaaaccgattgtgaagaataaggttccgaagt |
111 |
Q |
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| T |
18801508 |
aaaggggtgattgggagagaagcacaatggaagaggcgaaatggaatgaagatcaagaaatttatcaagaaaccgattgtgaagaataaggttccgaagt |
18801409 |
T |
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| Q |
112 |
ttattcttgctcatatttaatttcagtattattcggttttatgaaggt |
159 |
Q |
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| T |
18801408 |
ttattcttgctcatatttaatttcagtattattcggttttatgaaggt |
18801361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 150 - 343
Target Start/End: Complemental strand, 18801036 - 18800850
Alignment:
| Q |
150 |
ttatgaaggtatcatgaagtgggtttccaagcttgtatgaagcagtttatgaagaagttgaatgctttcatattgtaatggaattgtgctatggggaaca |
249 |
Q |
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| T |
18801036 |
ttatgaaagtatcatgaagtgggtttccaagcttgtatgaag------------aagttgaatgctttcatattgtaatggaattgtgctttagggaaca |
18800949 |
T |
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| Q |
250 |
actgaattattcatcaagaagtgatgttaatcatcatgtattgtcatgac-----atgagaattgttcttaaagttatcaagtttgagaagttgaagat |
343 |
Q |
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| T |
18800948 |
actgaattattcatcaagaagtgatgttagtcatcatgtattgtcatgacatgacatgagaattgttcttaaaattatcaagtttgagaagttgaagat |
18800850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 18190579 - 18190659
Alignment:
| Q |
158 |
gtatcatgaagtgggtttccaagcttgta-tgaagcagtttatgaagaagttgaatgctttcatattgtaatggaattgtg |
237 |
Q |
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| T |
18190579 |
gtatcatgaagtgggtttgcaagcttgtagtgaaggagtttatgaagaagttgaatgctttcatattgtgatggaattgtg |
18190659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 20383343 - 20383457
Alignment:
| Q |
227 |
atggaattgtgctatggggaacaactgaattattcatcaagaagtgatgttaatcatcatgtattgtcatgacatgagaattgttcttaaagttatcaag |
326 |
Q |
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| T |
20383343 |
atggaattctgctatgggtaacaactgagttatttagtaagaagtgatgttagtcatcatgtattgtcatgacatgggagttgtccacaaagttaccaag |
20383442 |
T |
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| Q |
327 |
tttgagaagttgaag |
341 |
Q |
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| T |
20383443 |
tctgagaagttgaag |
20383457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 45748199 - 45748244
Alignment:
| Q |
194 |
gtttatgaagaagttgaatgctttcatattgtaatggaattgtgct |
239 |
Q |
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| T |
45748199 |
gtttatgaagaagctgaatgctttcatcttgtgatggaattgtgct |
45748244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 54016342 - 54016397
Alignment:
| Q |
79 |
agaaaccgattgtgaagaataaggttccgaagtttattcttgctcatatttaattt |
134 |
Q |
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| T |
54016342 |
agaaacagattatgaacaataaggttccaaagtttattcttcttcatatttaattt |
54016397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 20810860 - 20810917
Alignment:
| Q |
158 |
gtatcatgaagtgggtttccaagcttgta-tgaagcagtttatgaagaagttgaatgctttc |
218 |
Q |
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| T |
20810860 |
gtatcatgaagtgggtttgcaaggttgtagtgaagcag----tgaagaagttgaatgctttc |
20810917 |
T |
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