View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_high_7 (Length: 356)
Name: NF16928_high_7
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 1181066 - 1181319
Alignment:
| Q |
17 |
aagatacataaatgtactttacttgagctagagaaaagcaccattattcctttttcttatccaataaaaacaaacaaaaatgttacaactaattattatt |
116 |
Q |
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| T |
1181066 |
aagatacataaatgtactttacttgagctagagaaaagcaccattattcctttttcttatccaataaaaacaaacaaaaatgttgcaactaattattatt |
1181165 |
T |
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| Q |
117 |
ccaatcaatcatattcttttcttctctattatattacttatccatttatttctccgcccnnnnnnnngttgcatttgtgacacatttgcttcttaaacnn |
216 |
Q |
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| T |
1181166 |
ccaatcaatcatattcttttcttctctattatattacttatccatttatttctccgccc-tttttttgttgcatttgtgacacatttgcttcttaaactt |
1181264 |
T |
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| Q |
217 |
nnnnnaatcatttgtaactccgccaacaaagcttatgcgtcatcatatccaatct |
271 |
Q |
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| T |
1181265 |
tttttaatcatttgtaactccgccaacaaagcttatgcgtcatcatatccaatct |
1181319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 1181352 - 1181397
Alignment:
| Q |
304 |
ttaactttccacatgtcttgtatctgtgtcattttgtgcctatgat |
349 |
Q |
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| T |
1181352 |
ttaactttccacatgtcttgtatctgtgtcattttgtgcctatgat |
1181397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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