View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_low_1 (Length: 798)
Name: NF16928_low_1
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 707; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 19 - 782
Target Start/End: Original strand, 9452206 - 9452968
Alignment:
| Q |
19 |
tgcaaggattccaattctgcttggacaaccttgggaaaaccatacacgtttttgtgcacgacacatgcctcggatattctttcctgctgccaagcatgct |
118 |
Q |
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| T |
9452206 |
tgcaaggattccaattctgcttggacaaccttgggaaaaccatacacgtttttgtgcacgacacatgcctcggatattctttcctgctgccaagcatgct |
9452305 |
T |
|
| Q |
119 |
cctggttgaaactgtatgacacgaaaacaggtaatattattaactattccttaataatgatgtgtaannnnnnnataaaatcaaggattgtgcatattca |
218 |
Q |
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| T |
9452306 |
cctggttgaaactgtatgacacgaaaacaggtaatattattaaatattccttaataatgatgtgtaatttttttataaaatcaaggattgtgcatattca |
9452405 |
T |
|
| Q |
219 |
tgagaatagatgagaaaatatctaaggtgtgtaagttataaaattcatgtccttttacttaacaactttaactcataggatagttggtttataacaaaag |
318 |
Q |
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| T |
9452406 |
tgagaatggatgagaaa-tatctaaggtgtgtaagttataaaattcatgtccttttacttaacaactttaactcataggatagttggtttataacaaaag |
9452504 |
T |
|
| Q |
319 |
ctaatcatcgttctctgactctcgaagtctgctctgaccctggtaacagtgctaaatctcttcaacccaactcacctaaatttcttattttattaagaaa |
418 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9452505 |
ctaatcatcgttctctgactctcgaggtctgctctgaccctggtaacagtgctaaatctcttcaacccaactcacctaaatttcttattttattaagaaa |
9452604 |
T |
|
| Q |
419 |
atgagacacgtagagaagaatatagtagaacttacttcactctgggcattagcacaaaaggcacagtcttcatgcaaacatttcatgcaattccacgacg |
518 |
Q |
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| T |
9452605 |
atgagacacgtagagaagaatatagtagaacttacttcactttgggtattagcacaaaaggcacagtcttcatgcaaacatttcatgcaattccacgacg |
9452704 |
T |
|
| Q |
519 |
agaaattaggggctgttgcataagccttgcatgtagagttcccaccaaaactaagggaatcatgtttactgattgcaggtgcatggtgagatgctatgtt |
618 |
Q |
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| T |
9452705 |
agaaattaggggccgttgcataagcattgcatgtagagttcccaccaaaactaagggaatcatgtttactgattgcaggtgcatggtgagatgctatgtt |
9452804 |
T |
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| Q |
619 |
gaatgtaacacttaacattacaagtgaaacacagataccaatcaaggagattagcatcaactttctccttccaaatctatcaattaaaatcatgctcaat |
718 |
Q |
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| T |
9452805 |
gaatgtaacacttaacattacaagtgaaacacagataccaatcaaggagattagcatcaactttctccttccaaatctatcaattaaaatcatgctcaat |
9452904 |
T |
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| Q |
719 |
atagtgccaacggcattcaaaccagaagtaactaaggagagtgcaagtgctgtggagttggagg |
782 |
Q |
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| T |
9452905 |
atagtgccaacggcattcaaaccagaagtaactaaggagagtgcaagtgctgtggagttggagg |
9452968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 446 - 782
Target Start/End: Original strand, 9441401 - 9441737
Alignment:
| Q |
446 |
gaacttacttcactctgggcattagcacaaaaggcacagtcttcatgcaaacatttcatgcaattccacgacgagaaattaggggctgttgcataagcct |
545 |
Q |
| |
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|||||||||||| ||||| ||| |||||||| ||||| |||||||||||||||| ||| |||||||||||| || ||| ||||| |||| |||||||| |
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| T |
9441401 |
gaacttacttcattctggctattggcacaaaatgcacaatcttcatgcaaacattgcatacaattccacgacaagtgatttggggccgttgtataagcct |
9441500 |
T |
|
| Q |
546 |
tgcatgtagagttcccaccaaaactaagggaatcatgtttactgattgcaggtgcatggtgagatgctatgttgaatgtaacacttaacattacaagtga |
645 |
Q |
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| T |
9441501 |
tgcatgtagagttcccaccaaagctaagtgaatcttgtatactgagtgaaggtgcatggtgagctgcctggttgaatgtaacgcttaatgttacaagtga |
9441600 |
T |
|
| Q |
646 |
aacacagataccaatcaaggagattagcatcaactttctccttccaaatctatcaattaaaatcatgctcaatatagtgccaacggcattcaaaccagaa |
745 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| | | |||||||| |||||| ||||| ||||| | ||||||| |
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| T |
9441601 |
aacaaagataccaatcaaggagataagcatcaactttcttcttccaaatctatcaatgagtaccatgctcactatagttccaacagcattaagaccagaa |
9441700 |
T |
|
| Q |
746 |
gtaactaaggagagtgcaagtgctgtggagttggagg |
782 |
Q |
| |
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||||| || || ||||||| ||||||||||||||||| |
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| T |
9441701 |
gtaaccaatgaaagtgcaaatgctgtggagttggagg |
9441737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 9440980 - 9441101
Alignment:
| Q |
19 |
tgcaaggattccaattctgcttggacaaccttgggaaaaccatacacgtttttgtgcacgacacatgcctcggatattctttcctgctgccaagcatgct |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||| |||||| |
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| T |
9440980 |
tgcaaggattccaattctgcttggacaaccttgagaaaaccatacgcaattttgtgcacaacacatgcctcggatattcttttctgctgccaaacatgct |
9441079 |
T |
|
| Q |
119 |
cctggttgaaactgtatgacac |
140 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
9441080 |
cctggaagaaactgtatgacac |
9441101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 9441169 - 9441278
Alignment:
| Q |
211 |
catattcatgagaatagatgagaaaatatctaaggtgtgtaagttataaaattcatgtcctttt--acttaacaactttaactcataggatagttggttt |
308 |
Q |
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|||||||||||||| ||||| ||| ||| | |||||| | || |||||||||||||||||||| ||||||||| || |||| |||||||||| ||||| |
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| T |
9441169 |
catattcatgagaaaggatgacaaa-tatatgaggtgtatcagatataaaattcatgtccttttttacttaacaatttaaacttataggatagtcggttt |
9441267 |
T |
|
| Q |
309 |
ataacaaaagc |
319 |
Q |
| |
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|| |||||||| |
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| T |
9441268 |
atgacaaaagc |
9441278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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