View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_low_11 (Length: 346)
Name: NF16928_low_11
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 30356930 - 30356672
Alignment:
| Q |
18 |
agaaagtcgattccttcccaacttccaagaaaaaattgaaactttcagtggtattgttttatttcgaatgatttcctaaagatcatggcgggtactcgac |
117 |
Q |
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| T |
30356930 |
agaaagtcgattctttcccaacttccaagaaaaaattgaaacttttggtggtattgttttattttgaatgatttcctaaagatcatggcgggtactcgac |
30356831 |
T |
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| Q |
118 |
tctaccgcagtcaacaatcggtgtactccactaacagcgtaacctttgttaggtgtaagataccaactccacatgtaaaagaatgcaagataaagcctca |
217 |
Q |
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| T |
30356830 |
tctaccgcagtcaacaatcggtgtactccactaacagcgtaacctttgttaggtgtaagataccaactccacatgtaaaagaatgcaagataaagcctca |
30356731 |
T |
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| Q |
218 |
caacattcccccaacatctcttcctccctgagcaaataactgacaacgtcatttcagag |
276 |
Q |
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| T |
30356730 |
caacattcccccaacatctcttcctccctgagcaaataaccgacatcgtcatttcagag |
30356672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 30356633 - 30356581
Alignment:
| Q |
289 |
aaactgtcaatctatcgcatacatatctactagtgtagcgaaacaactctctg |
341 |
Q |
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| T |
30356633 |
aaactgtcaatctatcgcatacatatctactagtgtagcgaaacaactctctg |
30356581 |
T |
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