View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_low_12 (Length: 316)
Name: NF16928_low_12
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 44968993 - 44968766
Alignment:
| Q |
1 |
aaaaatggaagaaatagaaaacattagaaagagaagggctttagggcatacaatataagaacgacctgatattattgagtagtactatgatattaagggc |
100 |
Q |
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| T |
44968993 |
aaaaatggaagaaatagaaaatattagaaagagaaga-ctttagggtatacaatataagaacgacctgatattattgagtagtactatgatattaagggc |
44968895 |
T |
|
| Q |
101 |
tgctctgcgcagtgatcagcgccatgaacactaagattccgactgtctaaactaatgaagcacttgtccaattccagcagacccttacaatgttcaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44968894 |
tgctctgcgcagtgatcagcgccatgaacactaagattccgactgtctaaactaatgaagcacttgtccaattccagcagacccttacaacgttcaccaa |
44968795 |
T |
|
| Q |
201 |
attgtttggctaacgtcattgccaactta |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44968794 |
attgtttggctaacgtcattgccaactta |
44968766 |
T |
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