View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_low_13 (Length: 280)
Name: NF16928_low_13
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 3586866 - 3586693
Alignment:
| Q |
65 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaat |
164 |
Q |
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| T |
3586866 |
tacctgcagatctgaaaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaat |
3586767 |
T |
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| Q |
165 |
gcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaataagcatgtcccgcgtaaataaa |
239 |
Q |
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| T |
3586766 |
gcgggaa-agttaagataaacatgtagaaaatgcgggaacagttaagaagaataagcatgtcccgcctaaataaa |
3586693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 9789599 - 9789750
Alignment:
| Q |
65 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaat |
164 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
9789599 |
tacctgtagatctgaaaagtctgacaacagcagcagctaggttgaagatatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaat |
9789698 |
T |
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| Q |
165 |
gcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaa |
216 |
Q |
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| T |
9789699 |
gcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaagaa |
9789750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 44504713 - 44504580
Alignment:
| Q |
72 |
agatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaatgcgggaa |
171 |
Q |
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| T |
44504713 |
agatctgaaaagtctgacaacagcagcagctaagttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaatgcgggaa |
44504614 |
T |
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| Q |
172 |
tagttaagataagcatgtagaaaatgcaggaaca |
205 |
Q |
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| T |
44504613 |
cagttgagataaacatgtagaaaatgcgggaaca |
44504580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 31678598 - 31678513
Alignment:
| Q |
65 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctata |
150 |
Q |
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| T |
31678598 |
tacctgtagatctgaaaagtctgacaacagcagcagctaggttgaaaagatgtgggaacggttaagaagaataacttatatatata |
31678513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 31678441 - 31678365
Alignment:
| Q |
161 |
aaatgcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaataagcatgtcccgcgtaaata |
237 |
Q |
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||||||||||| | |||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |
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| T |
31678441 |
aaatgcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaagcataagcatgtcccgcgtaaata |
31678365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 31678447 - 31678484
Alignment:
| Q |
200 |
ggaacaattaagaagaataagcatgtcccgcgtaaata |
237 |
Q |
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| T |
31678447 |
ggaacagttaagaagcataagcatgtcccgcgtaaata |
31678484 |
T |
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