View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_low_18 (Length: 249)
Name: NF16928_low_18
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 1181627 - 1181379
Alignment:
| Q |
1 |
aaaataatctaaatgaagaattaaattgaaagaaaagaagatta-tgctaaatttaaaatcctatagtaggtatagagtaaccaaaaataaactaacaaa |
99 |
Q |
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| T |
1181627 |
aaaataatctaaatgaagaattaaattgaaagaaaagaagattactgctaaatttaaaatcctatagtaggtatagattaaccaaaaataaactaacaaa |
1181528 |
T |
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| Q |
100 |
ataattcattctatttttagcatcacaagcatggcttagaggtaatgaatatttcttcaaacgaacgcagtggacttacaataatgtcgttaatgctatt |
199 |
Q |
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||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1181527 |
ataattcattctatttt-agcatcacaatcatggcttagtggtaatgaatatttcttcaaacgaacgcagtggacttacaataatgtcgttaatgctatt |
1181429 |
T |
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| Q |
200 |
tttctctatggattagaggtaataaattaacatcataggcacaaaatgac |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1181428 |
tttctctatggattagaggtaataaattaacatcataggcacaaaatgac |
1181379 |
T |
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