View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_low_3 (Length: 569)
Name: NF16928_low_3
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 221 - 553
Target Start/End: Complemental strand, 55070136 - 55069807
Alignment:
| Q |
221 |
ccacagcaactaatctcagatacactacaaacttaatattaatatagtttcttagcagaaaagaatatcatgtcatatgcaaagtaaaagagaaaaagat |
320 |
Q |
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| T |
55070136 |
ccacagcaactaatcccagatacactacaaacttaatattaatatagtttctaagcagaaaagaatatcatgtcatatgcaaagtaaaagagaaaaagat |
55070037 |
T |
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| Q |
321 |
atgatatattcttacgtatataggttaatgtgttcctcaggggtgaaattaggttcgggtaaaccttcaagaatgttgaggagtttggtgatacctttct |
420 |
Q |
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| T |
55070036 |
atgatatattcttacgtatataggttaatgtgttcctcaggagtgaaattaggttcgggtaaaccttcaagaatgttgaggagtttggtgatacctttct |
55069937 |
T |
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| Q |
421 |
gcatagtctcctatccttcttctaagttgataaattctctcatcgtcatgcttattgatgaatgaaccttgacagaagaaccctaatttggaacgaacgg |
520 |
Q |
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| T |
55069936 |
gaatagtctccaatccttcttctaagttgataaattctctcatcgtcatgcttattgatgaatgaaccttgacagaagaaccctaatttggaactaacgg |
55069837 |
T |
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| Q |
521 |
gtttgtacttttattatagtttctttttctact |
553 |
Q |
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| T |
55069836 |
gtttgtactt---ttatagtttctttttctact |
55069807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 55070338 - 55070194
Alignment:
| Q |
19 |
catatgtccaactacgatttctaagagtacactctcccacgcccaacactattgagtttggtggatattgggtctaacacatccttaaaaaaccggcgta |
118 |
Q |
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| T |
55070338 |
catatgtccaactacgatttctaagagtacactttcccacgcccaacactattgagtttggtggatattgggtctaacacatccttacaaaaccggcgta |
55070239 |
T |
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| Q |
119 |
aagattgatagtctttataaactctttcaggccttatctttatcc |
163 |
Q |
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| T |
55070238 |
aagattgatagtctttataaactctttcaggccttatctttatcc |
55070194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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