View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16928_low_5 (Length: 463)
Name: NF16928_low_5
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 36548537 - 36548334
Alignment:
| Q |
12 |
ccaagaaaatatgcatgttaacagaatattaatgnnnnnnnttatgttcaatatggacaaaatcaagtaaggggatataatggaatagcaaaatggcagc |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36548537 |
ccaataaaatatgcatgttaacagaatattaatgaaaaaaattatgttcaatatggacaaaatcaagtaaggggatataatggaatagcaaaatggcagc |
36548438 |
T |
|
| Q |
112 |
atcatctttacaaaaactaggtatcaatgtcttctcgggatcaagaaaactatgacattgtttacttcctcctaaaggtagagttatgataatacagttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
36548437 |
atcatctttacaaaaactaggtatcaatgtcttctcgggatcaagaaaactatgacattgtttacttcctcctaaagctagagttatgatgatacagttt |
36548338 |
T |
|
| Q |
212 |
tggt |
215 |
Q |
| |
|
|||| |
|
|
| T |
36548337 |
tggt |
36548334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 304 - 446
Target Start/End: Complemental strand, 36548270 - 36548128
Alignment:
| Q |
304 |
ggagaatgcaatgcataaaagtaccattgaagccctattcatatttttgtgaactaaaggtaaaggtcggttaccttggctttcataaacttgtccaaca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36548270 |
ggagaatgcaatgcataaaagtaccattgaagccctattcatatttttgtgaactaaaggcaaaggtcggttaccttggctttcatatacttgtccaaca |
36548171 |
T |
|
| Q |
404 |
gaatgttggaagatttgatgtcacggtgcacaataggaggatc |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36548170 |
gaatgttggaagatttgatgtcacggtgcacaataggaggatc |
36548128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 3991336 - 3991279
Alignment:
| Q |
83 |
gggatataatggaatagcaaaatggcagcatcatctttacaaaaactaggtatcaatg |
140 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3991336 |
gggatataatagaatagcaaaatggcagcatcatctttacaaaaactaggtatcaatg |
3991279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University