View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16928_low_7 (Length: 415)
Name: NF16928_low_7
Description: NF16928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16928_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 13171220 - 13171525
Alignment:
| Q |
16 |
aacatcaggtttattggcaaaacttggcaccatgcaaatttaatctttcattacttatgtcctgacaatatgacaatgatttccataagtattctattag |
115 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |
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| T |
13171220 |
aacatcgggtttattggcaaaacttggcactatgcaaatttaatctttcattatttctgtcctgacaat--------gatttccataagtattctattag |
13171311 |
T |
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| Q |
116 |
cttgaagactttagggttttgtgtcatttcctagtaatgttcatgtttgatacattattattttgtttcaatcctagacatggtttaatctttt----ac |
211 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13171312 |
cttgaagacttg-gtgttttgtgtcatttcctagtaatgttcatgtttgatacattattattttgtttcaatcctagacatggtttaatctttttactat |
13171410 |
T |
|
| Q |
212 |
tattatttatgtcctggcaatatgacagtgatatccaacaatgttctattttccagaagacttggtattttgtttcaattcctactgtttatgtttgata |
311 |
Q |
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||||||||||||| ||||||||||||||||||||||| || |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
13171411 |
tattatttatgtcttggcaatatgacagtgatatccatcactgttatattttccagaatacttggtattttatttcaattcctactgtttatgtttgata |
13171510 |
T |
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| Q |
312 |
catgataaagagttc |
326 |
Q |
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||||||||||||||| |
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| T |
13171511 |
catgataaagagttc |
13171525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 195 - 401
Target Start/End: Complemental strand, 41984222 - 41984014
Alignment:
| Q |
195 |
atggtttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacaatgttctattttccagaagacttggtattttgtttcaattcct |
294 |
Q |
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| T |
41984222 |
atggtttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacactgttctattttccagaagacttggtattttgtttcaattcct |
41984123 |
T |
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| Q |
295 |
actgtttatgtttgatacatgataaagagttctaattaattagtaatttctaacttattgttgaatattctcac--tgttatttctgtatttattttcaa |
392 |
Q |
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| T |
41984122 |
actgtttatgtttgatacatgataaagagttctaattaattagtaatttctaacttattgttgaatattctcactgtgttatttctgtatttattttcaa |
41984023 |
T |
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| Q |
393 |
tgaatcttc |
401 |
Q |
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||||||||| |
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| T |
41984022 |
tgaatcttc |
41984014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 41985197 - 41985054
Alignment:
| Q |
16 |
aacatcaggtttattggcaaaacttggcaccatgcaaatttaatctttcattacttatgtcctgacaatatgacaatgatttccataagtattctattag |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41985197 |
aacatcgggtttattggcaaaacttggcaccatgcaaatttaatctttcattacttatgtcctgacaatatgacaatgatttccataagtattctattag |
41985098 |
T |
|
| Q |
116 |
cttgaagactttagggttttgtgtcatttcctagtaatgttcat |
159 |
Q |
| |
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| T |
41985097 |
cttgaagactttagggttttgtgtcatttcctagtaatgttcat |
41985054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 154 - 295
Target Start/End: Complemental strand, 41980321 - 41980179
Alignment:
| Q |
154 |
gttcatgtttgatacattattattttgtttcaat-cctagacatggtttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacaa |
252 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| || |||||||||||||| ||||||| ||||||||||||||||||| |||| || | | |
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| T |
41980321 |
gttcatgtctgatacattattattttgtttcaattcctaaacttggtttaatcttttgctattatcgatgtcctggcaatatgacattgattgcccaaag |
41980222 |
T |
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| Q |
253 |
tgttctattttccagaagacttggtattttgtttcaattccta |
295 |
Q |
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| T |
41980221 |
tgatctattttctagaagaccgggtattttgtttcaattccta |
41980179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 18990924 - 18990794
Alignment:
| Q |
187 |
tcctagacatggtttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacaatgttctattttccagaagacttggtattttgttt |
286 |
Q |
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||||| || ||||||||||||||||||||||||||||| || || ||||| |||||| |||| | | |||||||| ||||||||||||||||||| | |
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| T |
18990924 |
tcctatacttggtttaatcttttactattatttatgtcatgacagtatgatagtgattgccaaaagttttctatttcgtagaagacttggtattttgtat |
18990825 |
T |
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| Q |
287 |
caattcc---tactgtttatgtttgatacat |
314 |
Q |
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|||| | || |||||||||||||||||| |
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| T |
18990824 |
aaattgccagtattgtttatgtttgatacat |
18990794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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