View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_high_10 (Length: 489)
Name: NF16929_high_10
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 37695381 - 37695171
Alignment:
| Q |
10 |
attattctcaactgaatcaatctcagaatttcttcaaacccttcagtctaagtaacttcaaaatggttcaatcataacaaaaacacaa--tttagagttc |
107 |
Q |
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| T |
37695381 |
attattctcaactgaatcaatttcagaatttcttcaaacccttcagtctaagtaacttcaaaatggttcaatcataacaaaaacacaaaatttagagttc |
37695282 |
T |
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| Q |
108 |
aacaccaaatgcaaaaatcagtacttcaaacccttaaaaatcatacctttatccctgtatctgctgtaaagctcagttaactgggtataattgacattcg |
207 |
Q |
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| T |
37695281 |
aacaccaaatgcaaaaatcagtacttcaaacccttaaaaatcatacctttatccctgtatctgctgtaaagctcagttaactgggtataattgacattcg |
37695182 |
T |
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| Q |
208 |
taaatccactg |
218 |
Q |
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||||||||||| |
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| T |
37695181 |
taaatccactg |
37695171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 372 - 472
Target Start/End: Complemental strand, 37695017 - 37694917
Alignment:
| Q |
372 |
tgaatttttatcataaacacaacnnnnnnnttgaattagagaaagtggggttgaaccatttcgaagcaacgttaactacaataatcactttccctttgta |
471 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37695017 |
tgaatttttatcataaacacaacaaaaaaattgaattagagaaagtggggttgaaccatttcgaagcaacgttaactacaataatcactttccctttgta |
37694918 |
T |
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| Q |
472 |
a |
472 |
Q |
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| T |
37694917 |
a |
37694917 |
T |
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