View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16929_high_11 (Length: 463)

Name: NF16929_high_11
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16929_high_11
NF16929_high_11
[»] chr5 (7 HSPs)
chr5 (13-447)||(3375312-3375746)
chr5 (13-447)||(3400375-3400810)
chr5 (264-356)||(33019309-33019401)
chr5 (272-436)||(7959515-7959681)
chr5 (39-191)||(33019788-33019941)
chr5 (304-363)||(33093402-33093461)
chr5 (26-60)||(23127447-23127481)
[»] chr4 (19 HSPs)
chr4 (18-229)||(35850394-35850605)
chr4 (264-394)||(24914806-24914939)
chr4 (277-364)||(20136160-20136249)
chr4 (21-196)||(21014336-21014511)
chr4 (21-225)||(25362052-25362259)
chr4 (270-382)||(21015054-21015166)
chr4 (148-233)||(26559549-26559634)
chr4 (18-68)||(39248501-39248551)
chr4 (18-65)||(7372556-7372603)
chr4 (277-357)||(29540090-29540171)
chr4 (14-174)||(56462516-56462676)
chr4 (21-225)||(24914035-24914242)
chr4 (18-90)||(51880661-51880733)
chr4 (267-354)||(39957336-39957423)
chr4 (386-433)||(41668859-41668906)
chr4 (179-234)||(56464094-56464148)
chr4 (18-64)||(41668990-41669036)
chr4 (166-234)||(11563188-11563256)
chr4 (18-58)||(30559692-30559732)
[»] scaffold0027 (1 HSPs)
scaffold0027 (271-393)||(25471-25595)
[»] chr8 (7 HSPs)
chr8 (264-435)||(13111810-13111982)
chr8 (14-244)||(30446067-30446296)
chr8 (284-388)||(45311934-45312039)
chr8 (127-242)||(11623912-11624027)
chr8 (284-357)||(36036196-36036268)
chr8 (319-395)||(11623328-11623404)
chr8 (34-63)||(154576-154605)
[»] chr3 (18 HSPs)
chr3 (264-369)||(33508686-33508791)
chr3 (270-437)||(53654458-53654621)
chr3 (280-397)||(34365993-34366110)
chr3 (30-231)||(48050475-48050678)
chr3 (145-244)||(33508930-33509029)
chr3 (277-389)||(49322372-49322485)
chr3 (270-398)||(28433409-28433539)
chr3 (182-229)||(29636687-29636734)
chr3 (18-91)||(44111912-44111986)
chr3 (18-93)||(34365673-34365747)
chr3 (386-433)||(43790696-43790743)
chr3 (287-356)||(30818138-30818207)
chr3 (18-57)||(28433700-28433739)
chr3 (270-333)||(48050924-48050987)
chr3 (319-363)||(1346723-1346767)
chr3 (287-350)||(30807530-30807594)
chr3 (18-65)||(46787047-46787095)
chr3 (25-73)||(53653893-53653941)
[»] chr2 (16 HSPs)
chr2 (285-435)||(25642770-25642917)
chr2 (298-436)||(25658853-25658992)
chr2 (166-242)||(25643318-25643394)
chr2 (145-234)||(2314205-2314294)
chr2 (14-64)||(14994624-14994674)
chr2 (291-361)||(15582588-15582658)
chr2 (306-363)||(45324217-45324274)
chr2 (49-230)||(15582197-15582380)
chr2 (18-65)||(2393779-2393826)
chr2 (277-364)||(11929276-11929362)
chr2 (18-61)||(15083998-15084041)
chr2 (18-60)||(36184470-36184512)
chr2 (18-67)||(14902401-14902450)
chr2 (18-59)||(35664440-35664481)
chr2 (288-348)||(13466379-13466439)
chr2 (130-221)||(25658615-25658707)
[»] chr1 (15 HSPs)
chr1 (277-388)||(15742001-15742113)
chr1 (265-357)||(19020110-19020202)
chr1 (278-356)||(13184049-13184127)
chr1 (278-356)||(13108921-13108999)
chr1 (278-356)||(13091756-13091835)
chr1 (18-67)||(42312816-42312865)
chr1 (284-332)||(29114688-29114736)
chr1 (18-65)||(27663798-27663845)
chr1 (14-65)||(44061512-44061563)
chr1 (29-182)||(15741130-15741286)
chr1 (31-67)||(7230305-7230341)
chr1 (270-340)||(5956270-5956340)
chr1 (29-67)||(52380894-52380932)
chr1 (386-435)||(34454154-34454203)
chr1 (310-363)||(42066905-42066958)
[»] chr6 (6 HSPs)
chr6 (277-435)||(24207884-24208043)
chr6 (14-122)||(28950362-28950473)
chr6 (18-67)||(14333857-14333906)
chr6 (319-363)||(4593389-4593433)
chr6 (18-59)||(24799051-24799092)
chr6 (29-61)||(7271546-7271578)
[»] chr7 (9 HSPs)
chr7 (129-229)||(13280587-13280685)
chr7 (18-64)||(26772710-26772756)
chr7 (18-67)||(31723886-31723935)
chr7 (35-91)||(13798166-13798222)
chr7 (270-341)||(34607622-34607692)
chr7 (18-67)||(3412255-3412304)
chr7 (319-357)||(687021-687059)
chr7 (264-336)||(2988971-2989043)
chr7 (39-67)||(10066485-10066513)
[»] scaffold0008 (1 HSPs)
scaffold0008 (276-348)||(4806-4877)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 3375312 - 3375746
Alignment:
Q  13 taggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggctataaaaaattacttaagt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3375312 taggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggctataaaaaattacttaagt 3375411  T
Q  113 tctaaagggattcatggttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  3375412 tctaaagggattcatggttgttggtaatggactaagttctatgttgactcatgtatagtttattacgatgttataaagggagttcaaatccttagtcttc 3375511  T
Q  213 caccatcccaaacccttccgtcgaaagaaaaatcagcgctttnnnnnnnnntcaatgttttttatatgaagtttgatgtttttgttagataatttcttaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3375512 caccatcccaaacccttccgtcgaaagaaaaatcagcgctttaaaaaaaaatcaatgttttttatatgaagtttgatgtttttgttagataatttcttaa 3375611  T
Q  313 cgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaatttttatatactctttatttaggacccaaactataagtttgccct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3375612 cgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaatttttatatactctttatttaggacccaaactataagtttgccct 3375711  T
Q  413 aggccaccaaaatcttagaaacgaccctaacatat 447  Q
    |||||||||||||||||||||||||||||||||||    
T  3375712 aggccaccaaaatcttagaaacgaccctaacatat 3375746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 3400375 - 3400810
Alignment:
Q  13 taggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggctataaaaaattacttaagt 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3400375 taggcagggcgaccatcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggctataaaaaattacttaagt 3400474  T
Q  113 tctaaagggattcatggttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  3400475 tctaaagggattcatggttgttggtaatggactaagttctatgttgactcatgtatagtttattacgatgttataaagggagttcaaatccttagtcttc 3400574  T
Q  213 caccatcccaaacccttccgtcgaaagaaaaatcagcgcttt-nnnnnnnnntcaatgttttttatatgaagtttgatgtttttgttagataatttctta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3400575 caccatcccaaacccttccgtcgaaagaaaaatcagcgctttaaaaaaaaaatcaatgttttttatatgaagtttgatgttttggttagataatttctta 3400674  T
Q  312 acgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaatttttatatactctttatttaggacccaaactataagtttgccc 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3400675 acgtagcaaaaactatcatcttcaaacaaattatttttacacgttagaaatttgaatttttatatactctttatttaggacccaaactataagtttgccc 3400774  T
Q  412 taggccaccaaaatcttagaaacgaccctaacatat 447  Q
    ||||||||||||||||||||||||||||||||||||    
T  3400775 taggccaccaaaatcttagaaacgaccctaacatat 3400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 33019401 - 33019309
Alignment:
Q  264 tcaatgttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacacttt 356  Q
    |||||||||||| |||||| ||||||||||||||||||||||||  ||| |||| ||| |||||||| ||||| ||||||||||| |||||||    
T  33019401 tcaatgttttttgtatgaattttgatgtttttgttagataattttgtaatgtagtaaacactatcatgttcaagcaaattattttaacacttt 33019309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 436
Target Start/End: Original strand, 7959515 - 7959681
Alignment:
Q  272 ttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttga-attt 370  Q
    ||||||| |||||||||| ||||| |||||| |||||||| ||||  |||||| ||||| |||||  |||||||||| ||||||||||||||  |  |||    
T  7959515 ttttatacgaagtttgatatttttattagattatttcttagcgtaataaaaaccatcattttcaagtaaattattttcacactttagaaattcaattttt 7959614  T
Q  371 ttatatactctttatttaggacccaaactataagtttgccc-taggccaccaaaatcttagaaacga 436  Q
    |||||| ||  ||||||| ||| |||| | ||  ||| ||| |||| ||||||||||||||||||||    
T  7959615 ttatatgcttattatttaagactcaaattgtagatttacccttaggacaccaaaatcttagaaacga 7959681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 191
Target Start/End: Complemental strand, 33019941 - 33019788
Alignment:
Q  39 aaaaaataagtacgaaatttgggccccaaca-aaaataattaggggttcattaggctataaaaaattacttaagttctaaagggattcatggttgttggt 137  Q
    |||||||||||||| |||||||| ||||||| |||| || |||||||||||||||   ||||||||||||||| ||| |||  ||    || ||||  ||    
T  33019941 aaaaaataagtacggaatttgggtcccaacaaaaaaaaaataggggttcattaggtcctaaaaaattacttaaattccaaattgaagtgtgattgtaagt 33019842  T
Q  138 aatggactaagttctatgttgactcatgtatagtttattgagatgttataaagg 191  Q
    |||  | | |||||| ||||||||||| |||| ||||| | |||||||||||||    
T  33019841 aataaatttagttctttgttgactcatttataatttatcgtgatgttataaagg 33019788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 33093402 - 33093461
Alignment:
Q  304 atttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatt 363  Q
    ||||| |||||||  ||||||||||||||||||  |||||||||| ||||||||||||||    
T  33093402 atttcctaacgtaataaaaactatcatcttcaagaaaattattttcacactttagaaatt 33093461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 23127481 - 23127447
Alignment:
Q  26 cgtcctaggccccaaaaaataagtacgaaatttgg 60  Q
    ||||||||||| |||||||||||||||||||||||    
T  23127481 cgtcctaggcctcaaaaaataagtacgaaatttgg 23127447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 35850605 - 35850394
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggctataaaaaattacttaagttctaa 117  Q
    |||||||||| |||| |||||||||||| || | |||||||||| |||||| |||| ||| ||||||||||||  |  ||||||||||||| | || |||    
T  35850605 agggcgaccgccctaagccccaaaaaattagcatgaaatttgggtcccaaccaaaaaaatgaggggttcattataccttaaaaaattacttcaattttaa 35850506  T
Q  118 agggattcatggttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccacca 217  Q
    |||||  | | |||||| |||||| | | |||||| ||||||| ||| |||| || |||| |||||||||||||||||| |||||| ||  |||||||||    
T  35850505 agggagacgttgttgttagtaatgaatttagttctttgttgacccatttataattcattgggatgttataaagggagtttaaatccataaccttccacca 35850406  T
Q  218 tcccaaaccctt 229  Q
    || |||||||||    
T  35850405 tcgcaaaccctt 35850394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 394
Target Start/End: Original strand, 24914806 - 24914939
Alignment:
Q  264 tcaatgttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatt 363  Q
    ||||||| || || ||||| |||||||||||| ||||||||||||||| ||||  |||||||||||| ||||| ||||||||||| | ||||||||||||    
T  24914806 tcaatgtattctagatgaattttgatgttttttttagataatttcttagcgtatgaaaaactatcattttcaagcaaattattttcagactttagaaatt 24914905  T
Q  364 tgaatttttata---tactctttatttaggaccc 394  Q
    | ||| ||| ||   ||||| |||||||||||||    
T  24914906 taaatatttttagtgtactcattatttaggaccc 24914939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 20136160 - 20136249
Alignment:
Q  277 tatgaagtttgatgtttttgttagataatttct--taacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaattt 364  Q
    |||||| ||||||||||||||| |||||| | |  |||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||    
T  20136160 tatgaattttgatgtttttgttggataatatatattaacgtagtaaaaactatcctcttcaaacaaattattttcacactttaaaaattt 20136249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 21014336 - 21014511
Alignment:
Q  21 gcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggctataaaaaa-ttacttaagttctaaag 119  Q
    ||||||||||||| | |||||||||| ||| |||||||||||||||||||||| ||||| | ||||||||  |  |||||||  || || | ||||||||    
T  21014336 gcgaccgtcctagactccaaaaaatatgtatgaaatttgggccccaacaaaaa-aattaagagttcattaaacactaaaaaagataattcaattctaaag 21014434  T
Q  120 ggattcatggttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagtt 196  Q
    ||||   || || || ||||| |||| |||||| |||||||  || |||| ||||||| |||||||| |||||||||    
T  21014435 ggatgtgtgattattagtaatcgacttagttctttgttgacctatttataatttattgtgatgttatgaagggagtt 21014511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 25362259 - 25362052
Alignment:
Q  21 gcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggc-tataaaaaattacttaagttctaaag 119  Q
    ||||||||| |||  |||||||||||||| | ||||| ||| ||||| ||||| ||||||||||||||||||| | |||  ||||| |||| | ||||||    
T  25362259 gcgaccgtcttagatcccaaaaaataagtccaaaattagggtcccaaaaaaaa-aattaggggttcattaggcctttaaccaattatttaattactaaag 25362161  T
Q  120 ggattcatggttgttggtaa----tggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccac 215  Q
    |||    || ||||| ||||    ||| || |||||| | || |||||| |||| ||||||| || ||||||||| |||||||||| || ||||||||||    
T  25362160 ggaggtgtgattgttagtaagtagtgggcttagttctttattaactcatttataatttattgtgaggttataaagagagttcaaattct-agtcttccac 25362062  T
Q  216 catcccaaac 225  Q
    ||||||||||    
T  25362061 catcccaaac 25362052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 382
Target Start/End: Original strand, 21015054 - 21015166
Alignment:
Q  270 ttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaattt-gaat 368  Q
    ||||||||||||||||| ||| |||||||| |||||||| |||||||| |||||||||  ||||||| ||||||  ||| |||||||  ||||||  |||    
T  21015054 ttttttatatgaagtttaatg-ttttgttaaataatttcgtaacgtagtaaaaactatactcttcaagcaaattgctttcacactttgaaaatttaaaat 21015152  T
Q  369 ttttatatactctt 382  Q
    || |||||||||||    
T  21015153 ttgtatatactctt 21015166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 26559549 - 26559634
Alignment:
Q  148 gttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccaccatcccaaacccttccgt 233  Q
    ||||| ||||||||| | |||| ||| ||| ||| ||||||||||||||||||| | ||| ||||||||||| |||||||||||||    
T  26559549 gttctttgttgactcgtttataattttttgtgattttataaagggagttcaaatgcctagccttccaccatctcaaacccttccgt 26559634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 39248551 - 39248501
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaac 68  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  39248551 agggcgaccgccctaggcccaaaaaaataagtacaaaatttgggccccaac 39248501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 7372556 - 7372603
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggcccc 65  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  7372556 agggcgactgtcctaggccctaaaaaataagtacaaaatttgggcccc 7372603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 29540171 - 29540090
Alignment:
Q  277 tatgaagtttgatgtttttgtt-agataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacacttta 357  Q
    |||||||| |||| |||||||| |||| | || ||||||||  ||||| |||| ||||||||||||||||||| ||||||||    
T  29540171 tatgaagtctgatatttttgtttagattaatttttaacgtaataaaaattatcttcttcaaacaaattattttcacacttta 29540090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 56462516 - 56462676
Alignment:
Q  14 aggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaa-aaataattaggggttcattaggctataaaaaattacttaagt 112  Q
    ||||||| ||||  |||||||  |||||| | ||||||||||||||| ||| || || |||||| |||| |||||||||||   |||||||||||||| |    
T  56462516 aggcaggacgactatcctaggttccaaaataaaagtacgaaatttggacccaaaaaagaaataaataggagttcattaggccc-aaaaaattacttaaat 56462614  T
Q  113 tctaaagggattcatggttgttggtaatggactaagttctatgttgactcatgtatagttta 174  Q
    | |||||||||   |||||||| ||||| | ||  ||||| ||||||| ||| |||| ||||    
T  56462615 tttaaagggatgtgtggttgttagtaataggctttgttctttgttgacccatttataattta 56462676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 24914035 - 24914242
Alignment:
Q  21 gcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggc-tataaaaaattacttaagttctaaag 119  Q
    ||||||||| ||| ||||||||  ||||||| ||||||||| ||||  ||||| ||||||| ||||||||||| | |||  ||||| |||| | ||||||    
T  24914035 gcgaccgtcttagaccccaaaacgtaagtacaaaatttgggtcccagaaaaaa-aattaggcgttcattaggcctttaaccaattatttaattactaaag 24914133  T
Q  120 ggattcatggttgttggtaa----tggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccac 215  Q
    |||    || ||||| |||     ||| || |||||| |||| || ||| |||| ||||||| || ||||||||| |||||||||| || || |||||||    
T  24914134 ggaggtgtgattgttagtacgtagtgggcttagttctttgttaacccatttataatttattgtgaggttataaagagagttcaaattct-agccttccac 24914232  T
Q  216 catcccaaac 225  Q
    ||||||||||    
T  24914233 catcccaaac 24914242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 51880733 - 51880661
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcatta 90  Q
    |||||||| ||||||||||||||||||| ||| | ||||| ||||||||| | | | ||||| ||||||||||    
T  51880733 agggcgactgtcctaggccccaaaaaattagttcaaaattggggccccaaaatataaaattaagggttcatta 51880661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 354
Target Start/End: Original strand, 39957336 - 39957423
Alignment:
Q  267 atgttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacact 354  Q
    ||||||||| |||||| | ||||| |||| |||||| |||| |||||| |  ||||  |||||| ||||||||||| |||||||||||    
T  39957336 atgttttttgtatgaaatctgatgattttattagatcattttttaacgcaataaaagttatcattttcaaacaaataatttttacact 39957423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 41668906 - 41668859
Alignment:
Q  386 ttaggacccaaactataagtttgccctaggccaccaaaatcttagaaa 433  Q
    |||||||||||| |||| ||| |||||||||||||||||||| |||||    
T  41668906 ttaggacccaaattataggttcgccctaggccaccaaaatctcagaaa 41668859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 56464094 - 56464148
Alignment:
Q  179 gatgttataaagggagttcaaatccttagtcttccaccatcccaaacccttccgtc 234  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||||||| |||||||    
T  56464094 gatgttataa-gggagttcaaatccctagccttctaccatcccaaacctttccgtc 56464148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 41669036 - 41668990
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccc 64  Q
    |||| ||||| ||||||||||||||||||||||  ||||||||||||    
T  41669036 agggagaccgccctaggccccaaaaaataagtagaaaatttgggccc 41668990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 11563256 - 11563188
Alignment:
Q  166 tatagtttattgagatgttataaagggagttcaaatccttagtcttccaccatcccaaacccttccgtc 234  Q
    |||| ||||| | ||||||||||||||||||||||  |  || ||| ||||||||||||| ||||||||    
T  11563256 tataatttatcgtgatgttataaagggagttcaaaatcaaagcctttcaccatcccaaactcttccgtc 11563188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 30559732 - 30559692
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaattt 58  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  30559732 agggcgaccgtcctagcttccaaaaaataagtacgaaattt 30559692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 271 - 393
Target Start/End: Complemental strand, 25595 - 25471
Alignment:
Q  271 tttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaa--t 368  Q
    ||||| |||||| ||| ||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||| ||||||| |||| || ||  |    
T  25595 tttttgtatgaattttaatgtttttgttagataatttctttacgtagtaaaaacaatcatcttcaagcaaattattttcacactttggaaagttaaactt 25496  T
Q  369 ttttatatactctttatttaggacc 393  Q
    |||||||||||||||||||| ||||    
T  25495 ttttatatactctttatttatgacc 25471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 435
Target Start/End: Original strand, 13111810 - 13111982
Alignment:
Q  264 tcaatgttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatt 363  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||||||| |||||||  |||||    
T  13111810 tcaatgttttttgtatgcattttaatgtttttgttagataatttcttaatgtagtgaaaactatcctcttcaaacaaattattttcacactttgaaaatt 13111909  T
Q  364 tga--atttttatatactctttatttaggacccaaactataagtttgccctaggccaccaaaatcttagaaacg 435  Q
    | |   ||||||||||||| ||||||||| |||||| |||| |||  | |||||| || ||| ||| |||||||    
T  13111910 taattttttttatatactcattatttagg-cccaaattataggttccctctaggctactaaattctcagaaacg 13111982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 30446296 - 30446067
Alignment:
Q  14 aggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggctataaaaaattacttaagtt 113  Q
    ||||||||| | |||| |||| | | |||||||||||  ||||| |||  |||||||||| |||||||||||||||||||   |||||||||||||| ||    
T  30446296 aggcagggcaaacgtcttaggtctcgaaaaataagtaaaaaattcgggttccaacaaaaaaaattaggggttcattaggcctaaaaaaattacttaaatt 30446197  T
Q  114 ctaaagggattcatggttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttcc 213  Q
    ||||||||||   |||||||| |||||   || |||||| | |||||  || |||| ||||||| ||| |||| |||||||||||||||| ||  |||      
T  30446196 ctaaagggatgtgtggttgttagtaatatgcttagttctttattgacctatttataatttattgtgattttat-aagggagttcaaatccctacccttaa 30446098  T
Q  214 accatcccaaacccttccgtcgaaagaaaaa 244  Q
     |||||||||||| |||| || ||| |||||    
T  30446097 tccatcccaaacctttccatcaaaataaaaa 30446067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 388
Target Start/End: Original strand, 45311934 - 45312039
Alignment:
Q  284 tttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaa-tttttatatactctt 382  Q
    |||||| |||||||| |||||| | || |||||| |||||||||||||||||||||||||||||  |||||||| |||||| || |||||||||| || |    
T  45311934 tttgatttttttgttggataatatatttacgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcat 45312033  T
Q  383 tattta 388  Q
    ||||||    
T  45312034 tattta 45312039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 11624027 - 11623912
Alignment:
Q  127 tggttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccaccatcccaaacc 226  Q
    |||||||| |||||||||| |||||| |||||||  ||  ||| ||| ||| ||||||||||||  ||||||||||| ||| ||| || ||| |||||||    
T  11624027 tggttgttagtaatggacttagttctttgttgacctataaatatttttttgtgatgttataaagaaagttcaaatccgtagcctttcagcattccaaacc 11623928  T
Q  227 cttccgtcgaaagaaa 242  Q
    |||||||| |||||||    
T  11623927 cttccgtcaaaagaaa 11623912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 36036268 - 36036196
Alignment:
Q  284 tttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacacttta 357  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||| || || ||||||||||| ||||||||    
T  36036268 tttgatgtttttgttagataattt-ttaacatagtaaaaactatcatttttaagcaaattattttcacacttta 36036196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 11623404 - 11623328
Alignment:
Q  319 aaaaactatcatcttcaaacaaattatttttacactttagaaatttgaa-tttttatatactctttatttaggaccca 395  Q
    |||||||||| ||||||| ||||||||||| |||||||  |||||| || ||||||||||||| ||||||||||||||    
T  11623404 aaaaactatcctcttcaagcaaattattttcacactttgaaaatttaaattttttatatactc-ttatttaggaccca 11623328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 154576 - 154605
Alignment:
Q  34 gccccaaaaaataagtacgaaatttgggcc 63  Q
    ||||||||||||||||||||||||||||||    
T  154576 gccccaaaaaataagtacgaaatttgggcc 154605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 33508791 - 33508686
Alignment:
Q  264 tcaatgttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatt 363  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||| || |||||||||||||||| | ||||||||||| ||| | || |||||    
T  33508791 tcaatgttttttatatgaaatttgatgtttttgttagagaatttcttaacgcagtaaaaactatcatcttccagcaaattattttaacaatataaaaatt 33508692  T
Q  364 tgaatt 369  Q
    | ||||    
T  33508691 taaatt 33508686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 437
Target Start/End: Original strand, 53654458 - 53654621
Alignment:
Q  270 ttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaatt 369  Q
    |||||| |||||| |||||||||||||||||||||||||||| | ||| |||||||||| ||||||| ||   |||||| ||||||||||  ||    ||    
T  53654458 ttttttgtatgaattttgatgtttttgttagataatttcttatcatagtaaaaactatcctcttcaagcacgctattttcacactttagatttt----tt 53654553  T
Q  370 tttatatactctttatttaggacccaaactataagtttgccctaggccaccaaaatcttagaaacgac 437  Q
    ||||||||||| |||||||||||| ||| | || ||| | ||||  ||| |||||||||| |||||||    
T  53654554 tttatatactcattatttaggacctaaattgtaggttcgtcctaaaccatcaaaatcttaaaaacgac 53654621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 280 - 397
Target Start/End: Original strand, 34365993 - 34366110
Alignment:
Q  280 gaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaatttttatatact 379  Q
    |||| ||| ||| |||||||||||||||||||| | || ||||||| || ||||||| |||| |||||| | ||||||||||||| | ||||||||||||    
T  34365993 gaagcttgctgtatttgttagataatttcttaaagcagtaaaaactttcttcttcaagcaaactattttcatactttagaaatttaattttttatatact 34366092  T
Q  380 ctttatttaggacccaaa 397  Q
    | ||||||| ||||||||    
T  34366093 cattatttaagacccaaa 34366110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 48050475 - 48050678
Alignment:
Q  30 ctaggccccaaaaaataagtacgaaatttgggccccaac--aaaaataattaggggttcattaggctataaaaaattacttaagttctaaagggattcat 127  Q
    |||||| |||||| ||||||||||||||| || ||||||  ||||| |||||| ||||||||||||   |||||||||||||| |||||| || ||   |    
T  48050475 ctaggctccaaaatataagtacgaaatttaggtcccaacaaaaaaaaaattagaggttcattaggcccaaaaaaattacttaaattctaatggaatgtgt 48050574  T
Q  128 ggttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccaccatcccaaaccc 227  Q
    ||||| | |||| |   | |||||| ||||||| ||| |||| ||||| | ||||||| |||||  ||||||||   ||| ||||||||||||||||| |    
T  48050575 ggttgatagtaacgagtttagttctttgttgacccatttataatttatcgtgatgttaaaaaggaggttcaaatttctagccttccaccatcccaaactc 48050674  T
Q  228 ttcc 231  Q
    ||||    
T  48050675 ttcc 48050678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 33509029 - 33508930
Alignment:
Q  145 taagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccaccatcccaaacccttccgtcgaaagaaaaa 244  Q
    ||||||||  || ||||||| |||| |||||| ||||||| |||| ||||||||||| | ||||||||||||||||||||||| | |||| ||| |||||    
T  33509029 taagttcttcgtcgactcatttataatttattaagatgttgtaaatggagttcaaattcatagtcttccaccatcccaaaccccttcgtcaaaaaaaaaa 33508930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 389
Target Start/End: Original strand, 49322372 - 49322485
Alignment:
Q  277 tatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaa-tttttata 375  Q
    |||||| ||| |||||||||||||||||| | ||||||||| ||||  |||||| ||||| ||||||||||  |||||||| |||||| || |||||||     
T  49322372 tatgaattttaatgtttttgttagataatatattaacgtagtaaaatttatcattttcaagcaaattatttccacactttaaaaattttaactttttatg 49322471  T
Q  376 tactctttatttag 389  Q
    || || ||||||||    
T  49322472 taatcattatttag 49322485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 398
Target Start/End: Complemental strand, 28433539 - 28433409
Alignment:
Q  270 ttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttc-aaacaaattatttttacactttagaaatttga-- 366  Q
    |||||| |||||| |||||  ||||||| || | |||||||||||| | |||||||||||||||| |||||||||||||||| |||||  |||||| |      
T  28433539 ttttttttatgaattttgaa-tttttgtaaggtcatttcttaacgtggtaaaaactatcatcttcaaaacaaattatttttatactttgaaaatttaatt 28433441  T
Q  367 atttttatatactctttatttaggacccaaac 398  Q
    |||||||||||||| | ||||| ||| |||||    
T  28433440 atttttatatactcataatttatgactcaaac 28433409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 29636734 - 29636687
Alignment:
Q  182 gttataaagggagttcaaatccttagtcttccaccatcccaaaccctt 229  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  29636734 gttataatgggagttcaaatccgtagtcttccaccatcccaaaccctt 29636687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 44111912 - 44111986
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggcccc-aacaaaaataattaggggttcattag 91  Q
    ||||||||| || ||||||||||||||||| || |||||||||||||| ||||||||  |||| |||||||||||    
T  44111912 agggcgaccatcataggccccaaaaaataaatatgaaatttgggcccctaacaaaaaatattaagggttcattag 44111986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 34365673 - 34365747
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattaggc 93  Q
    |||||||| |||||| |||  | ||||||| ||||||||||||| |||||| |||| |||||||||||||||||||    
T  34365673 agggcgacagtcctaagcctaataaaataactacgaaatttgggtcccaactaaaa-aattaggggttcattaggc 34365747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 43790696 - 43790743
Alignment:
Q  386 ttaggacccaaactataagtttgccctaggccaccaaaatcttagaaa 433  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||    
T  43790696 ttaggacccaaattgtaagttcgccctaggccaccaaaatcttagaaa 43790743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 30818138 - 30818207
Alignment:
Q  287 gatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacacttt 356  Q
    ||||||||| |||||| ||||  |||||||  ||||| |||||||||||| ||||||| |||||||||||    
T  30818138 gatgtttttattagattattttgtaacgtaataaaaattatcatcttcaatcaaattacttttacacttt 30818207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 28433739 - 28433700
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatt 57  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  28433739 agggtgaccgtcctatgccccaaaaaataagtacgaaatt 28433700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 48050924 - 48050987
Alignment:
Q  270 ttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatctt 333  Q
    |||||| |||||| ||||||||||||  |||||||||| |||| |||| |||||||||| ||||    
T  48050924 ttttttgtatgaattttgatgtttttactagataattttttaatgtagtaaaaactatcctctt 48050987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 1346723 - 1346767
Alignment:
Q  319 aaaaactatcatcttcaaacaaattatttttacactttagaaatt 363  Q
    ||||||||||||||| ||  |||||||||||||||||||| ||||    
T  1346723 aaaaactatcatctttaagaaaattatttttacactttaggaatt 1346767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 30807530 - 30807594
Alignment:
Q  287 gatgtttttgttagataatttcttaacgtagcaaaaact-atcatcttcaaacaaattattttta 350  Q
    ||||||||| |||||||| ||  |||||||  ||||| | |||||||||||||||||||||||||    
T  30807530 gatgtttttattagataactttgtaacgtaataaaaatttatcatcttcaaacaaattattttta 30807594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 46787095 - 46787047
Alignment:
Q  18 agggcgaccgtcctaggccccaaaa-aataagtacgaaatttgggcccc 65  Q
    |||||||||| ||||| |||||||| |||||||||||||||||| ||||    
T  46787095 agggcgaccgccctagaccccaaaataataagtacgaaatttggacccc 46787047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 53653893 - 53653941
Alignment:
Q  25 ccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaa 73  Q
    ||||| ||| ||| |||||||||||| |||||||||||| |||||||||    
T  53653893 ccgtcttagacccaaaaaaataagtatgaaatttgggccacaacaaaaa 53653941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 285 - 435
Target Start/End: Complemental strand, 25642917 - 25642770
Alignment:
Q  285 ttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaatttttatatactcttta 384  Q
    ||||||||||||||||||||| |||||||| || |||||||||  ||||||| |||||||||||  ||||||| |||||| | |||||| |||||| |||    
T  25642917 ttgatgtttttgttagataatatcttaacgcagtaaaaactatattcttcaagcaaattatttt--cactttaaaaatttaattttttacatactc-tta 25642821  T
Q  385 tttaggacccaaactataagtttgccctaggccaccaaaatcttagaaacg 435  Q
    ||||||||||||| | || |||  |||| | ||||||||| || |||||||    
T  25642820 tttaggacccaaattgtaggttcaccctcgaccaccaaaaactcagaaacg 25642770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 436
Target Start/End: Original strand, 25658853 - 25658992
Alignment:
Q  298 tagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttga-atttttatatactctttatttaggacccaa 396  Q
    ||||| ||||||||| |||| |||||| |||||| |||| ||||||||||| ||||||| ||||||| |  ||||||||||||| |||| ||||||||||    
T  25658853 tagatgatttcttaatgtagtaaaaacaatcatcatcaagcaaattattttcacactttggaaatttaatttttttatatactcattatgtaggacccaa 25658952  T
Q  397 actataagtttgccctaggccaccaaaatcttagaaacga 436  Q
    | | || ||||||  || |||||||||||||  |||||||    
T  25658953 attgtaggtttgctttaagccaccaaaatctcggaaacga 25658992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 25643394 - 25643318
Alignment:
Q  166 tatagtttattgagatgttataaagggagttcaaatccttagtcttccaccatcccaaacccttccgtcgaaagaaa 242  Q
    |||| ||||||| |||||||||||| |||||||||| | ||||||||||||||||||||| |||||||| |||||||    
T  25643394 tataatttattgtgatgttataaagagagttcaaattcgtagtcttccaccatcccaaactcttccgtcaaaagaaa 25643318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 2314294 - 2314205
Alignment:
Q  145 taagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccaccatcccaaacccttccgtc 234  Q
    |||||||| |||  |||||| | || |||| || ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  2314294 taagttctttgtcaactcatttgtaatttactgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttccgtc 2314205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 14994624 - 14994674
Alignment:
Q  14 aggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccc 64  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  14994624 aggcagggcgaccgccctaggcccgaaaaaataagtacaaaatttgggccc 14994674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 15582588 - 15582658
Alignment:
Q  291 tttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaa 361  Q
    ||||||||||||||||||||||  ||| |||||||||  ||||||| ||||||||||| | ||||| ||||    
T  15582588 tttttgttagataatttcttaatttagtaaaaactatactcttcaagcaaattattttcatactttggaaa 15582658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 45324274 - 45324217
Alignment:
Q  306 ttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatt 363  Q
    |||||||||||   |||||||||||||| || ||||||||||||||| ||||||||||    
T  45324274 ttcttaacgtaatgaaaactatcatcttaaagcaaattatttttacattttagaaatt 45324217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 15582197 - 15582380
Alignment:
Q  49 tacgaaatttgggccccaacaaaaataattaggggttcattaggctat-aaaaaattacttaagttctaaagggattcatggttgttggtaat---ggac 144  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||  | |||||||||| ||| ||||||  |||    |||||||| |||||    | |    
T  15582197 tacgaaatttggggcccaacaaaaat--ttaggggttcattaggcgctaaaaaaattacataaattctaattggaggtctggttgtttgtaattaatggc 15582294  T
Q  145 taagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccaccatcccaaacccttc 230  Q
    | |||| | |||||||  || |||| ||||||  ||||||| ||||||||||||||||  |||  ||| |||||||| ||||||||    
T  15582295 ttagttatttgttgacctatttataatttattatgatgttaaaaagggagttcaaatctctagcattctaccatcccgaacccttc 15582380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 2393779 - 2393826
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggcccc 65  Q
    ||||||||||  ||| || |||||||||||||||||||||||||||||    
T  2393779 agggcgaccgctctaagctccaaaaaataagtacgaaatttgggcccc 2393826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 11929276 - 11929362
Alignment:
Q  277 tatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaattt 364  Q
    |||||||| |||||||||| |||| | |||| |||| |||  |||  |||||||||||||  |||||||||| |||||||||||||||    
T  11929276 tatgaagtctgatgtttttattagtttattt-ttaaggtaataaaccctatcatcttcaagtaaattattttcacactttagaaattt 11929362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 15083998 - 15084041
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttggg 61  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||    
T  15083998 agggcgatcgtcttaggcccaaaaaaataagtacgaaatttggg 15084041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 36184512 - 36184470
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgg 60  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||    
T  36184512 agggcgaccgccctagaccccaaaaaataagtacaaaatttgg 36184470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 14902450 - 14902401
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaa 67  Q
    |||||||||| |||||| |||||||||||| ||||| |||||||| ||||    
T  14902450 agggcgaccgccctaggtcccaaaaaataattacgatatttgggctccaa 14902401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 35664440 - 35664481
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttg 59  Q
    |||||||||| ||||||||| ||||||||||||| |||||||    
T  35664440 agggcgaccgccctaggccctaaaaaataagtacaaaatttg 35664481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 13466379 - 13466439
Alignment:
Q  288 atgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttt 348  Q
    ||||| || |||||| ||||||||| |||  ||||||||||||||||||||| | ||||||    
T  13466379 atgttattattagattatttcttaaagtaataaaaactatcatcttcaaacacactatttt 13466439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 25658615 - 25658707
Alignment:
Q  130 ttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatgttat-aaagggagttcaaatccttagtcttccaccatccc 221  Q
    ||||| |||||||| | |||||| |||||||  || ||||  |||||| |||||||| ||| |||||||||||  |||| |||||||||||||    
T  25658615 ttgttagtaatggatttagttctttgttgacctatttataaattattgtgatgttataaaatggagttcaaattattagccttccaccatccc 25658707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 388
Target Start/End: Original strand, 15742001 - 15742113
Alignment:
Q  277 tatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaa-tttttata 375  Q
    |||||| ||||||||||||||| |||||| | ||||| ||| |||||||||| ||||| ||||||||||||| |||||||| |||||| || ||||||||    
T  15742001 tatgaattttgatgtttttgttggataatatattaacatagtaaaaactatcctcttcgaacaaattattttcacactttaaaaatttaaattttttata 15742100  T
Q  376 tactctttattta 388  Q
    || || |||||||    
T  15742101 taatccttattta 15742113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 19020202 - 19020110
Alignment:
Q  265 caatgttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacacttta 357  Q
    ||||||||||| |||||||||| |||||||| |||||| || ||||||| ||  |||||||||||||||||||||||||||||| | ||||||    
T  19020202 caatgttttttgtatgaagtttaatgtttttattagattatgtcttaacataataaaaactatcatcttcaaacaaattattttcaaacttta 19020110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 13184049 - 13184127
Alignment:
Q  278 atgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacacttt 356  Q
    ||||| ||||||||||||||||||||||||||||||  || ||||| |||| ||||||||||||||||||| |||||||    
T  13184049 atgaattttgatgtttttgttagataatttcttaacaaagtaaaaattatcctcttcaaacaaattattttcacacttt 13184127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 13108999 - 13108921
Alignment:
Q  278 atgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacacttt 356  Q
    ||||| |||||||||||||||||||||| |||||||  || ||||| |||| ||||||||||||||||||| |||||||    
T  13108999 atgaattttgatgtttttgttagataatctcttaacaaagtaaaaattatcctcttcaaacaaattattttcacacttt 13108921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 13091835 - 13091756
Alignment:
Q  278 atgaagtttgatgtttttgttagataatttcttaacgtag-caaaaactatcatcttcaaacaaattatttttacacttt 356  Q
    ||||| ||||||||||||||||||||||||||||||  ||  ||||| |||| ||||||||||||||||||| |||||||    
T  13091835 atgaattttgatgtttttgttagataatttcttaacaaagtaaaaaattatcctcttcaaacaaattattttcacacttt 13091756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 42312816 - 42312865
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaa 67  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  42312816 agggcgaccgtcctaggtcccaaaaaatatatacgaaatttgggccccaa 42312865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 29114688 - 29114736
Alignment:
Q  284 tttgatgtttttgttagataatttcttaacgtagcaaaaactatcatct 332  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  29114688 tttgatgtttttattagataatttctcaacgtagtaaaaactatcatct 29114736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 27663798 - 27663845
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggcccc 65  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||||    
T  27663798 agggcgaccgcgctaggcccaaaaaaataagtacgaaatttgggcccc 27663845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 44061563 - 44061512
Alignment:
Q  14 aggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggcccc 65  Q
    ||||| |||||||| |||| |||||||||||||||||| |||||||||||||    
T  44061563 aggcaaggcgaccgccctaagccccaaaaaataagtacaaaatttgggcccc 44061512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 15741130 - 15741286
Alignment:
Q  29 cctaggccccaaaaaataagtacgaaatttgggcccca---acaaaaataattaggggttcattaggctataaaaaattacttaagttctaaagggattc 125  Q
    ||||||||| ||||| ||||||| |||||| ||||| |   | ||||| ||||| |||||||||| |||| ||||||||||| || ||||||||| |  |    
T  15741130 cctaggccctaaaaagtaagtacaaaatttaggcccaacaaaaaaaaaaaattaagggttcattacgctaaaaaaaattactgaaattctaaaggaagac 15741229  T
Q  126 atggttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatg 182  Q
     |||||||| || ||| ||| | |||| ||||||| ||  |||| ||||||| ||||    
T  15741230 gtggttgttagtgatgaacttatttctttgttgacccagttataatttattgtgatg 15741286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 7230305 - 7230341
Alignment:
Q  31 taggccccaaaaaataagtacgaaatttgggccccaa 67  Q
    |||||||||||||||||||||||||||||| ||||||    
T  7230305 taggccccaaaaaataagtacgaaatttggaccccaa 7230341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 5956270 - 5956340
Alignment:
Q  270 ttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaa 340  Q
    |||||| | |||||| |||||||||| |||||  |||| ||||||||  ||||||||| ||||||||||||    
T  5956270 ttttttgtttgaagtctgatgtttttattagactatttattaacgtaataaaaactataatcttcaaacaa 5956340  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 52380894 - 52380932
Alignment:
Q  29 cctaggccccaaaaaataagtacgaaatttgggccccaa 67  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  52380894 cctaggctccaaaaaataagtacgaaatttgggacccaa 52380932  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 34454154 - 34454203
Alignment:
Q  386 ttaggacccaaactataagtttgccctaggccaccaaaatcttagaaacg 435  Q
    |||||||||||| | || ||| |||||||||||||||||||| |||||||    
T  34454154 ttaggacccaaattgtaggttcgccctaggccaccaaaatctcagaaacg 34454203  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 42066958 - 42066905
Alignment:
Q  310 taacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatt 363  Q
    |||||||  ||||||||||||||||||  |||||||||| ||||||||| ||||    
T  42066958 taacgtaataaaaactatcatcttcaagaaaattattttcacactttagcaatt 42066905  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 435
Target Start/End: Original strand, 24207884 - 24208043
Alignment:
Q  277 tatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaa-tttttata 375  Q
    |||||| ||||||||||||||| |||||| | || |||||| ||||| || | ||| ||| | ||||||||||||||||| ||||||| || ||||||||    
T  24207884 tatgaattttgatgtttttgttggataatatatttacgtagtaaaaattaacctctacaagcgaattatttttacactttggaaatttaaactttttata 24207983  T
Q  376 tactctttatttaggacccaaactataagtttgccctaggccaccaaaatcttagaaacg 435  Q
    || || |||||||| |  |||| |||| ||| |   |||||||||||||||||| |||||    
T  24207984 taatcattatttagaattcaaattataggttcgttttaggccaccaaaatcttataaacg 24208043  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 28950362 - 28950473
Alignment:
Q  14 aggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaacaaaaa--taattaggggttcattagg--ctataaaaaattactta 109  Q
    ||||||||| |||||  |||||||||||||||||||| ||||||||||||||| ||||||   ||||||||||||||||||  ||| |||||| ||||||    
T  28950362 aggcagggctaccgttataggccccaaaaaataagtatgaaatttgggccccagcaaaaaataaattaggggttcattaggtccta-aaaaaaatactta 28950460  T
Q  110 agttctaaaggga 122  Q
    | |||||| ||||    
T  28950461 aattctaatggga 28950473  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 14333857 - 14333906
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaa 67  Q
    |||||||||| || | |||| |||||||||||||||||||||||||||||    
T  14333857 agggcgaccgcccaaagcccaaaaaaataagtacgaaatttgggccccaa 14333906  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 4593389 - 4593433
Alignment:
Q  319 aaaaactatcatcttcaaacaaattatttttacactttagaaatt 363  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||    
T  4593389 aaaaactatcatcttcaagaaaattatttttacactttaggaatt 4593433  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 24799092 - 24799051
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttg 59  Q
    |||||| ||||| |||||||||||||| ||||||||||||||    
T  24799092 agggcggccgtcttaggccccaaaaaacaagtacgaaatttg 24799051  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 7271546 - 7271578
Alignment:
Q  29 cctaggccccaaaaaataagtacgaaatttggg 61  Q
    |||||| ||||||||||||||||||||||||||    
T  7271546 cctaggtcccaaaaaataagtacgaaatttggg 7271578  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 13280587 - 13280685
Alignment:
Q  129 gttgttggtaatggactaagttctatgttgactcatgtatagtttattgagatgttataaagggagttcaaatccttagtcttccaccatcccaaaccct 228  Q
    |||||| |||||||||| |||||| |||||||  || |||| ||||||| |||||||  |||||||||||||||| ||  ||||||||||||||||||||    
T  13280587 gttgttagtaatggacttagttctttgttgaccaatttataatttattgtgatgtta--aagggagttcaaatccctacccttccaccatcccaaaccct 13280684  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 26772756 - 26772710
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccc 64  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  26772756 agggcgaccgtcctaggccccaaaaaataagtatgaaatttgggccc 26772710  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 31723886 - 31723935
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaa 67  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31723886 agggcgaccgttctaggccccaaaaaataagtacaaaatttgggccccaa 31723935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 13798166 - 13798222
Alignment:
Q  35 ccccaaaaaataagtacgaaatttgggccccaacaaaaataattaggggttcattag 91  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||  |||||||||    
T  13798166 ccccaaaaaataagtacgaaatttggaccccaacaaaaaaaattagaagttcattag 13798222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 34607622 - 34607692
Alignment:
Q  270 ttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaa 341  Q
    |||||| |||||| |||||| |||| |||||||||||||||||||||  ||||||||| |||||||||||||    
T  34607622 ttttttgtatgaattttgatatttt-gttagataatttcttaacgtaataaaaactataatcttcaaacaaa 34607692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 3412304 - 3412255
Alignment:
Q  18 agggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaa 67  Q
    |||||||||||||||||  |||||||||||||||  ||||||||||||||    
T  3412304 agggcgaccgtcctaggttccaaaaaataagtacagaatttgggccccaa 3412255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 687059 - 687021
Alignment:
Q  319 aaaaactatcatcttcaaacaaattatttttacacttta 357  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  687059 aaaaactatcatcttcaagcaaattaattttacacttta 687021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 2989043 - 2988971
Alignment:
Q  264 tcaatgttttttatatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaa 336  Q
    |||||||||||| |||||||| | | |||||| |||||| ||||| ||||||   ||||| ||||||||||||    
T  2989043 tcaatgttttttgtatgaagtctaaggtttttattagattatttcctaacgtgataaaaaatatcatcttcaa 2988971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 10066485 - 10066513
Alignment:
Q  39 aaaaaataagtacgaaatttgggccccaa 67  Q
    |||||||||||||||||||||||||||||    
T  10066485 aaaaaataagtacgaaatttgggccccaa 10066513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 4877 - 4806
Alignment:
Q  276 atatgaagtttgatgtttttgttagataatttcttaacgtagcaaaaactatcatcttcaaacaaattatttt 348  Q
    ||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||| ||||| |||||||||||    
T  4877 atatgaattttgatgttttt-ttacataatttcttaacgtagtaaaaactatcattttcaagcaaattatttt 4806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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