View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_high_13 (Length: 445)
Name: NF16929_high_13
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 43589517 - 43589081
Alignment:
| Q |
1 |
cggttatatcttgaatgcatgagaaattaatttgattagcagaaaataagagaagagtcaagctttttcagagtctagaatattttgggtacacacaatt |
100 |
Q |
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| T |
43589517 |
cggttatatcttgaatgcatgagaaattaatttgattagcagaaaataagagaagagtcaagctttttcagagtctagaatattttgggtacacacaatt |
43589418 |
T |
|
| Q |
101 |
gaaattgacacatcacatgtgcacgtatacctgtctgtaaatagtaaaaaccatcaaaacaacagacttgttgtctctcttgactatatataatacttaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43589417 |
gaaattgacacatcacatgtgcacgtatacttgtctgtaaatagtaaaaaccatcaaaacaacagacttgttgtctctcttgactatatataatacttaa |
43589318 |
T |
|
| Q |
201 |
tgtgattaatgacacaagctataagtacattatagcaccacaccagtatgtaacgcaaaagatataattccctgcaggacccattgttggcttttcatag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43589317 |
tgtgattaatgacacaagctataagtacattatagcaccacaccagtatgtaacgcaaaagatataagtccctgcaggacccattgttggcttttcatag |
43589218 |
T |
|
| Q |
301 |
gtccacgaggacataaagaatttgatgaagggcataaataaatagagatatagcatataggacccctcccctcacaatcacatggcttgtcctttttctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43589217 |
gtccacgaggacataaagaatttgatgaagggcataaataaatagagatatagcatataggacccctcccctcacaatcacatggcttgtcc-ttttctt |
43589119 |
T |
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| Q |
401 |
aataacctccctgccaata-ttttacttgctctctgct |
437 |
Q |
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||||||||||||||||||| ||||||||||||| |||| |
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| T |
43589118 |
aataacctccctgccaatatttttacttgctctttgct |
43589081 |
T |
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