View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16929_high_16 (Length: 395)
Name: NF16929_high_16
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 36982948 - 36983342
Alignment:
| Q |
1 |
cataactcgctactagttctatcctacttattttcctaatattcttgttgaatgcaggaatcaaacagtttgctcctttcaagacaagtagtaataaatc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36982948 |
cataactcgctactagttctatcttacttattttcctaatattcttgttgaatgcaggaatcaaacagtttgctcctttcaagacaagtagtaataaatc |
36983047 |
T |
|
| Q |
101 |
aaaagcttattaagacatacctcagaagtggttggtcctgattctcccatttacatacttgttcaatttaaggatcaagtcttaagcaaactatggtctt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36983048 |
aaaagcttataaagacatacctcagaagtggttggtcctgattctcccatttacatacttgttcaatttaaggatcaagtcttaagcaaactatggtctt |
36983147 |
T |
|
| Q |
201 |
ctcaaattc-------aagtgcccaactagttgaattttttgtaaaactcttgtgcttctttgata-ttttttgagttaaatacagatatannnnnnngt |
292 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
36983148 |
ctcaaattcaatgttgaagtgcccaactagttgaattttttgtaaaactcttgtgcttctttgatatttttttgagttaaatacagatttttttttttgt |
36983247 |
T |
|
| Q |
293 |
tccaaacagtcacaaatatgttttatatttttaaagcacgaaaagttttaaaataaaactaaattgtactgttaacaaccttattgatattcttc |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36983248 |
tccaaacagtcacaaatatgttttatatttttaaagcacgaaaagttttaaaataaaactaaattgtactgttaacagccttattgatattcttc |
36983342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University