View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_high_18 (Length: 389)
Name: NF16929_high_18
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 8796724 - 8796351
Alignment:
| Q |
1 |
ttaaatatgaatgaagtatttttgggaggaatcaactatagtgctgataagacctggggtttatagaaggaagcttgaattagacttaagnnnnnnngga |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8796724 |
ttaaagatgaatgaagtatttttgggaggaatcaactatagtgctgacaagacctggggtttatagaaggaagcttgaattagacttaagaaaaaaagga |
8796625 |
T |
|
| Q |
101 |
cggctacgagtatacataaagggaatattttagggaaaaaataatgaggaataaagttgtgcatctaaaggaattagcattttcnnnnnnnn--aagtaa |
198 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8796624 |
cggctacgagtatacataaagggaatattttagggaaaaaataatgaggaataaagttgtgcatctaaaggaattagcatttttttttttttttaagtaa |
8796525 |
T |
|
| Q |
199 |
cattgaggtcaaggtgaggtctttttaagattgagggggtcaaatacgaggctattaattccatgtgattgttgtcccttattgtactgttgcttcaggg |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8796524 |
cattgaggtcaaggtgaggtctttttaagattgagggggtcaaatacgaggctattaattccatgtgattgttgtcccttattgtactgttgcttcaggg |
8796425 |
T |
|
| Q |
299 |
tgccgtcaactatatgatcacatgcctctcatgatcacatgtttatgccttcaatttttgataaattattatgc |
372 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8796424 |
tgccatcaactatatgatcacatgcctctcatgatcacatgtttatgccttcaatttttgataaattattatgc |
8796351 |
T |
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