View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_high_20 (Length: 375)
Name: NF16929_high_20
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 10800974 - 10801309
Alignment:
| Q |
12 |
attatactatgttagtaacaagttattcctatgaacagatatattaatatgtcgttcaaaatatacatttttccttgcttcaacataatggggaaggggg |
111 |
Q |
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| T |
10800974 |
attatactatgttagtaacaagttattcctatgaacagatatattaatatgtcgttcaaaatatacatttttccttgcttcaacataatggggaaggggg |
10801073 |
T |
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| Q |
112 |
cattacaacatttttctatcaagagcaatgctatatatagccaatatatcacgatcatgttataataaaataaaatcaatgtcaaacac-nnnnnnntat |
210 |
Q |
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| T |
10801074 |
cattacaacatttttctatcaagagcaa------------ccaatatatcacgatcatgttataataaaataaaatcaatgtcaaacacaaaaaaaatat |
10801161 |
T |
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| Q |
211 |
catagcatgttatatatgttctcatnnnnnnnntactacctctattttgttcccattgaaaattgggcagcaagttctcgatcctttg-nnnnnnnnnnn |
309 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10801162 |
tatagcatgttatatatgttctcataaaaaaaatactacctctattttgttcccattgaaaattgggcagcaagttctcgatcctttgttttttattttt |
10801261 |
T |
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| Q |
310 |
nnnggtttaattttgttctattaagttacaaatgttacacaccttagt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10801262 |
tttggtttaattttgttctattaagttacaaatgttacacaccttagt |
10801309 |
T |
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