View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_high_26 (Length: 349)
Name: NF16929_high_26
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 40960846 - 40960518
Alignment:
| Q |
16 |
atattggcatattggattgtctcgttgatttttagtgaaatgcagtagatcccccggacccggtnnnnnnnnnnnnnttgcaattgatgcactttgttgg |
115 |
Q |
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| T |
40960846 |
atattggtatattggattgtctcgttgatttttaatgaaatgcattagatcctc-ggacccaataaaaataaatgaattgcaattgatgcaccttgttgg |
40960748 |
T |
|
| Q |
116 |
gtctgttatttatactgttgtagttatcaatgaggtaaatattaataactaaggagtggggaaattggttaaatttaacatggtgttaaatactgannnn |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960747 |
gtctgttatttatactgttgtagttatcaatgaggtaaatattaataactaaggagtggggaaattggttaaatttaacatggtgttaaatactgatttt |
40960648 |
T |
|
| Q |
216 |
nnnaatggtttgaaagataagttttgatattcttactcttcccctcataatattgtnnnnnnntggttgtattctctcaaaccgagttcaattgatccat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40960647 |
tttaatggtttgaaagataagttttgatattcttactcttcccctcataatattgt-aaaaaatggttgtattctctcaaaccgagttcaattgatccat |
40960549 |
T |
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| Q |
316 |
agcttgagtattattatcaaatctatttcat |
346 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40960548 |
agcttgagtattattatcaaatctatttcat |
40960518 |
T |
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