View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_high_29 (Length: 315)
Name: NF16929_high_29
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 41 - 302
Target Start/End: Original strand, 12534981 - 12535242
Alignment:
| Q |
41 |
gttattttctagtgcacacacttggaagcaaacctacatatagaaatgcaagtaaaaacagaagcatagtcctttaattagaaaactagaaagcaagtag |
140 |
Q |
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| T |
12534981 |
gttattttctagtgcacacacttggaagcaaacttacatatagaaatgcgagtaaaaacagaagcatagtcctttaattagaaaactagaaagcaagtag |
12535080 |
T |
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| Q |
141 |
tctacaatatgctacatgagaagtagctcctttgtttttggcacatccttatttcctgtatcatacagctaacttccacaataatggtattattccagaa |
240 |
Q |
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| T |
12535081 |
tctacaatattctacatgagaagtagctcctttgtttttggcacatccttatttcttgtattgtacagctaacttccacaataatggtattattccagaa |
12535180 |
T |
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| Q |
241 |
aaggtttgcaaaattgcaaactcagctcttccacttttcttgcaaccttaattcttccacct |
302 |
Q |
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| T |
12535181 |
aaggtttgcaaaattgcaaactcagctcttccacttttcttgcaaccttaactcttccacct |
12535242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 12541244 - 12541135
Alignment:
| Q |
37 |
cattgttattttctagtgcacacacttggaagcaaacctacatatagaaatgcaagtaaaaacagaagcatagtcctttaattagaaaactagaaagcaa |
136 |
Q |
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| T |
12541244 |
cattattattttgcagtgcacacacttggaagcaaag----atgtagaagtgaaagtaaaagcagaagcatggtccttaaattaaaaaactagaaagcat |
12541149 |
T |
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| Q |
137 |
gtagtctacaatat |
150 |
Q |
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| T |
12541148 |
gtaatctacaatat |
12541135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 14508394 - 14508427
Alignment:
| Q |
102 |
aagcatagtcctttaattagaaaactagaaagca |
135 |
Q |
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| T |
14508394 |
aagcatagtcctttaattagaaaaatagaaagca |
14508427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 47569779 - 47569738
Alignment:
| Q |
105 |
catagtcctttaattagaaaactagaaagcaagtagtctaca |
146 |
Q |
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| T |
47569779 |
catagtccttaaattagaaaactagaaagcatgtaatctaca |
47569738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 28326936 - 28326888
Alignment:
| Q |
80 |
atagaaatgcaagtaaaaacagaagcatagtcctttaattagaaaacta |
128 |
Q |
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| T |
28326936 |
atagaagtgcaactaaaagcaaaagcatagtcctttaattagcaaacta |
28326888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 384135 - 384191
Alignment:
| Q |
79 |
tatagaaatgcaagtaaaaacagaagcatagtcctttaattagaaaactagaaagca |
135 |
Q |
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||||||| ||||| ||||| |||||||||||| | | |||||||||||||||||||| |
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| T |
384135 |
tatagaagtgcaactaaaagcagaagcatagtgcataaattagaaaactagaaagca |
384191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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