View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16929_high_4 (Length: 727)

Name: NF16929_high_4
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16929_high_4
NF16929_high_4
[»] chr8 (15 HSPs)
chr8 (19-53)||(44012283-44012317)
chr8 (19-51)||(35455479-35455511)
chr8 (19-49)||(4135764-4135794)
chr8 (19-53)||(34865697-34865731)
chr8 (19-53)||(42159184-42159218)
chr8 (19-52)||(8378263-8378296)
chr8 (19-52)||(17911031-17911064)
chr8 (19-52)||(18673442-18673475)
chr8 (19-52)||(20091150-20091183)
chr8 (19-52)||(26746902-26746935)
chr8 (19-52)||(27667542-27667575)
chr8 (19-52)||(30852048-30852081)
chr8 (19-52)||(32629768-32629801)
chr8 (19-52)||(38896633-38896666)
chr8 (19-52)||(42927189-42927222)
[»] chr4 (20 HSPs)
chr4 (19-53)||(51817118-51817152)
chr4 (19-52)||(17609152-17609185)
chr4 (19-51)||(35877017-35877049)
chr4 (19-51)||(37390570-37390602)
chr4 (21-52)||(3761812-3761843)
chr4 (20-51)||(41855063-41855094)
chr4 (17-51)||(23949709-23949743)
chr4 (19-53)||(37669989-37670023)
chr4 (19-52)||(4294103-4294136)
chr4 (19-52)||(7258083-7258116)
chr4 (19-52)||(22128794-22128827)
chr4 (20-53)||(33501394-33501427)
chr4 (19-52)||(34246829-34246862)
chr4 (15-52)||(36507495-36507532)
chr4 (19-52)||(39915844-39915877)
chr4 (19-52)||(42507710-42507743)
chr4 (19-52)||(48380647-48380680)
chr4 (19-52)||(50690592-50690625)
chr4 (19-52)||(51779607-51779640)
chr4 (19-52)||(54270843-54270876)
[»] chr3 (18 HSPs)
chr3 (19-53)||(38999517-38999551)
chr3 (19-52)||(48910514-48910547)
chr3 (19-53)||(8176430-8176464)
chr3 (19-53)||(47241235-47241269)
chr3 (23-53)||(50106232-50106262)
chr3 (19-52)||(2929864-2929897)
chr3 (19-52)||(5137646-5137679)
chr3 (19-52)||(8104304-8104337)
chr3 (19-52)||(9794546-9794579)
chr3 (19-52)||(24978903-24978936)
chr3 (19-52)||(28227045-28227078)
chr3 (19-52)||(28686337-28686370)
chr3 (19-52)||(32078093-32078126)
chr3 (19-52)||(32100256-32100289)
chr3 (19-52)||(39144581-39144614)
chr3 (19-52)||(47915996-47916029)
chr3 (19-52)||(51166457-51166490)
chr3 (19-52)||(54747882-54747915)
[»] chr1 (19 HSPs)
chr1 (19-53)||(50942694-50942728)
chr1 (19-52)||(8462455-8462488)
chr1 (19-52)||(41529183-41529216)
chr1 (19-52)||(42334432-42334465)
chr1 (19-53)||(11353633-11353667)
chr1 (19-53)||(14203005-14203039)
chr1 (19-53)||(25792229-25792263)
chr1 (19-53)||(40132300-40132334)
chr1 (19-52)||(8712052-8712085)
chr1 (19-52)||(8768623-8768656)
chr1 (19-52)||(13985444-13985477)
chr1 (19-52)||(25984449-25984482)
chr1 (19-52)||(34967505-34967538)
chr1 (20-53)||(35150190-35150223)
chr1 (19-52)||(39501757-39501790)
chr1 (19-52)||(39640342-39640375)
chr1 (19-52)||(41457878-41457911)
chr1 (19-52)||(47038486-47038519)
chr1 (19-52)||(47393556-47393589)
[»] chr7 (9 HSPs)
chr7 (19-52)||(3264418-3264451)
chr7 (19-53)||(10200482-10200516)
chr7 (19-53)||(22624387-22624421)
chr7 (19-52)||(1643680-1643713)
chr7 (19-52)||(6696795-6696828)
chr7 (20-53)||(14314641-14314674)
chr7 (19-52)||(24685602-24685635)
chr7 (19-52)||(24924346-24924379)
chr7 (19-52)||(28234315-28234348)
[»] chr6 (7 HSPs)
chr6 (19-52)||(3787166-3787199)
chr6 (19-53)||(8493572-8493606)
chr6 (19-53)||(14310941-14310975)
chr6 (19-52)||(1114488-1114521)
chr6 (19-52)||(2010243-2010276)
chr6 (19-52)||(10364644-10364677)
chr6 (19-52)||(27080508-27080541)
[»] chr2 (16 HSPs)
chr2 (19-52)||(36443587-36443620)
chr2 (19-52)||(39293420-39293453)
chr2 (19-53)||(12123043-12123077)
chr2 (19-53)||(36068177-36068211)
chr2 (19-52)||(1684311-1684344)
chr2 (19-52)||(5669181-5669214)
chr2 (19-52)||(8341655-8341688)
chr2 (19-52)||(12467703-12467736)
chr2 (19-52)||(13196436-13196469)
chr2 (19-52)||(14943438-14943471)
chr2 (19-52)||(16062602-16062635)
chr2 (19-52)||(22050642-22050675)
chr2 (19-52)||(25899074-25899107)
chr2 (19-52)||(27244960-27244993)
chr2 (19-52)||(40833542-40833575)
chr2 (19-52)||(44710008-44710041)
[»] scaffold0154 (1 HSPs)
scaffold0154 (19-53)||(4154-4188)
[»] chr5 (10 HSPs)
chr5 (19-53)||(39895974-39896008)
chr5 (19-53)||(39990375-39990409)
chr5 (19-52)||(12503919-12503952)
chr5 (19-52)||(15268448-15268481)
chr5 (19-52)||(21582692-21582725)
chr5 (19-52)||(21772822-21772855)
chr5 (19-52)||(25784705-25784738)
chr5 (19-52)||(29816278-29816311)
chr5 (19-52)||(36487357-36487390)
chr5 (19-52)||(40555143-40555176)
[»] scaffold0160 (1 HSPs)
scaffold0160 (19-52)||(25935-25968)
[»] scaffold0057 (1 HSPs)
scaffold0057 (20-53)||(39837-39870)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 44012317 - 44012283
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||||||||||||||||||||||||    
T  44012317 atataatagaaaaaataacattaatgtttcattga 44012283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 35455511 - 35455479
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcatt 51  Q
    |||||||||||||||||||||||||||||||||    
T  35455511 atataatagaaaaaataacattaatgtttcatt 35455479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 4135794 - 4135764
Alignment:
Q  19 atataatagaaaaaataacattaatgtttca 49  Q
    |||||||||||||||||||||||||||||||    
T  4135794 atataatagaaaaaataacattaatgtttca 4135764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 34865731 - 34865697
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  34865731 atataatagaaaaaataacattaatgattcattga 34865697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 42159184 - 42159218
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||||||||||||||||||||||| |||||    
T  42159184 atataatagaaaaaataacattaatgttttattga 42159218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 8378263 - 8378296
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  8378263 atataataggaaaaataacattaatgtttcattg 8378296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 17911064 - 17911031
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  17911064 atataatagaaaaattaacattaatgtttcattg 17911031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 18673475 - 18673442
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  18673475 atataatagaaaaagtaacattaatgtttcattg 18673442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 20091150 - 20091183
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  20091150 atataataggaaaaataacattaatgtttcattg 20091183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 26746935 - 26746902
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||||||| |||||||||||||||    
T  26746935 atataatagaaaaaataatattaatgtttcattg 26746902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 27667575 - 27667542
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  27667575 atataataggaaaaataacattaatgtttcattg 27667542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 30852081 - 30852048
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  30852081 atataataggaaaaataacattaatgtttcattg 30852048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 32629768 - 32629801
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||| ||||    
T  32629768 atataatagaaaaaataacattaatgttttattg 32629801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 38896633 - 38896666
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  38896633 atataataggaaaaataacattaatgtttcattg 38896666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 42927222 - 42927189
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  42927222 atataataggaaaaataacattaatgtttcattg 42927189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 51817118 - 51817152
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||||||||||||||||||||||||    
T  51817118 atataatagaaaaaataacattaatgtttcattga 51817152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 17609152 - 17609185
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  17609152 atataatagaaaaaataacattaatgtttcattg 17609185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 35877017 - 35877049
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcatt 51  Q
    |||||||||||||||||||||||||||||||||    
T  35877017 atataatagaaaaaataacattaatgtttcatt 35877049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 37390602 - 37390570
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcatt 51  Q
    |||||||||||||||||||||||||||||||||    
T  37390602 atataatagaaaaaataacattaatgtttcatt 37390570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 3761843 - 3761812
Alignment:
Q  21 ataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||    
T  3761843 ataatagaaaaaataacattaatgtttcattg 3761812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 41855094 - 41855063
Alignment:
Q  20 tataatagaaaaaataacattaatgtttcatt 51  Q
    ||||||||||||||||||||||||||||||||    
T  41855094 tataatagaaaaaataacattaatgtttcatt 41855063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 23949709 - 23949743
Alignment:
Q  17 atatataatagaaaaaataacattaatgtttcatt 51  Q
    |||||||||||||||||||||||||||||| ||||    
T  23949709 atatataatagaaaaaataacattaatgttgcatt 23949743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 37670023 - 37669989
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  37670023 atataataggaaaaataacattaatgtttcattga 37669989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 4294103 - 4294136
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  4294103 atataataggaaaaataacattaatgtttcattg 4294136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 7258083 - 7258116
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  7258083 atataatagaaaaagtaacattaatgtttcattg 7258116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 22128827 - 22128794
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||| ||||||||||||||||||||    
T  22128827 atataatagaaaagataacattaatgtttcattg 22128794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 33501427 - 33501394
Alignment:
Q  20 tataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||||||| ||||||||||||||||||||    
T  33501427 tataatagaaaaagtaacattaatgtttcattga 33501394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 34246862 - 34246829
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||| |||||||||||||||||||||||||||||    
T  34246862 atattatagaaaaaataacattaatgtttcattg 34246829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 36507495 - 36507532
Alignment:
Q  15 aaatatataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  36507495 aaatatataataggaaaaataaaattaatgtttcattg 36507532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 39915877 - 39915844
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  39915877 atataataggaaaaataacattaatgtttcattg 39915844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 42507710 - 42507743
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  42507710 atataatagaaaaagtaacattaatgtttcattg 42507743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 48380680 - 48380647
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  48380680 atataataggaaaaataacattaatgtttcattg 48380647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 50690592 - 50690625
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  50690592 atataataggaaaaataacattaatgtttcattg 50690625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 51779640 - 51779607
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  51779640 atataatagaaaaagtaacattaatgtttcattg 51779607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 54270876 - 54270843
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  54270876 atataatagaaaaaataacattaatatttcattg 54270843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 38999551 - 38999517
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||||||||||||||||||||||||    
T  38999551 atataatagaaaaaataacattaatgtttcattga 38999517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 48910514 - 48910547
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  48910514 atataatagaaaaaataacattaatgtttcattg 48910547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 8176464 - 8176430
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||||||| ||||||||||||||||    
T  8176464 atataatagaaaaaataaaattaatgtttcattga 8176430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 47241269 - 47241235
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  47241269 atataataggaaaaataacattaatgtttcattga 47241235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 50106232 - 50106262
Alignment:
Q  23 aatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||||||||||||||||||||    
T  50106232 aatagaaaaaataacattaatgtttcattga 50106262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 2929864 - 2929897
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  2929864 atataataggaaaaataacattaatgtttcattg 2929897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 5137646 - 5137679
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  5137646 atataataggaaaaataacattaatgtttcattg 5137679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 8104337 - 8104304
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  8104337 atataataggaaaaataacattaatgtttcattg 8104304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 9794579 - 9794546
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  9794579 atataatagaaaaaataacattaatatttcattg 9794546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 24978936 - 24978903
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  24978936 atataataggaaaaataacattaatgtttcattg 24978903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 28227078 - 28227045
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  28227078 atataataggaaaaataacattaatgtttcattg 28227045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 28686337 - 28686370
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  28686337 atataatagaaaaagtaacattaatgtttcattg 28686370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 32078126 - 32078093
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  32078126 atataataggaaaaataacattaatgtttcattg 32078093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 32100256 - 32100289
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  32100256 atataataggaaaaataacattaatgtttcattg 32100289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 39144581 - 39144614
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  39144581 atataataggaaaaataacattaatgtttcattg 39144614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 47915996 - 47916029
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  47915996 atataatagaaaaaataacattaatatttcattg 47916029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 51166457 - 51166490
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  51166457 atataataggaaaaataacattaatgtttcattg 51166490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 54747882 - 54747915
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  54747882 atataatagaaaaaataacattaatttttcattg 54747915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 50942728 - 50942694
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||||||||||||||||||||||||    
T  50942728 atataatagaaaaaataacattaatgtttcattga 50942694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 8462455 - 8462488
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  8462455 atataatagaaaaaataacattaatgtttcattg 8462488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 41529216 - 41529183
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  41529216 atataatagaaaaaataacattaatgtttcattg 41529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 42334432 - 42334465
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  42334432 atataatagaaaaaataacattaatgtttcattg 42334465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 11353667 - 11353633
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||| ||||||||||||||||||||    
T  11353667 atataatagaaaaagtaacattaatgtttcattga 11353633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 14203039 - 14203005
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  14203039 atataataggaaaaataacattaatgtttcattga 14203005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 25792263 - 25792229
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  25792263 atataataggaaaaataacattaatgtttcattga 25792229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 40132334 - 40132300
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  40132334 atataataggaaaaataacattaatgtttcattga 40132300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 8712052 - 8712085
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  8712052 atataatagaaaaagtaacattaatgtttcattg 8712085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 8768623 - 8768656
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  8768623 atataatagaaaaaataacattaatatttcattg 8768656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 13985444 - 13985477
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  13985444 atataataggaaaaataacattaatgtttcattg 13985477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 25984482 - 25984449
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  25984482 atataataggaaaaataacattaatgtttcattg 25984449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 34967505 - 34967538
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  34967505 atataatagaaaaaataacattaatttttcattg 34967538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 35150190 - 35150223
Alignment:
Q  20 tataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||||||||||||||||| ||||||||||    
T  35150190 tataatagaaaaaataacattaaagtttcattga 35150223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 39501790 - 39501757
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  39501790 atataatagaaaaaataacattaatatttcattg 39501757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 39640375 - 39640342
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  39640375 atataatagaaaaaataacattaatatttcattg 39640342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 41457878 - 41457911
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  41457878 atataatagaaaaaataacattaatatttcattg 41457911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 47038486 - 47038519
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  47038486 atataataggaaaaataacattaatgtttcattg 47038519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 47393556 - 47393589
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  47393556 atataatagaaaaagtaacattaatgtttcattg 47393589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 3264451 - 3264418
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  3264451 atataatagaaaaaataacattaatgtttcattg 3264418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 10200482 - 10200516
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  10200482 atataataggaaaaataacattaatgtttcattga 10200516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 22624421 - 22624387
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||| ||||||||||||||||||||    
T  22624421 atataatagaaaaagtaacattaatgtttcattga 22624387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 1643680 - 1643713
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  1643680 atataataggaaaaataacattaatgtttcattg 1643713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 6696795 - 6696828
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||| |||||||||||||||||||||||||    
T  6696795 atataataaaaaaaataacattaatgtttcattg 6696828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 14314674 - 14314641
Alignment:
Q  20 tataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||||||||||||| |||||||||    
T  14314674 tataatagaaaaaataacattaatatttcattga 14314641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 24685602 - 24685635
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  24685602 atataataggaaaaataacattaatgtttcattg 24685635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 24924346 - 24924379
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  24924346 atataatagaaaaaataacattaatttttcattg 24924379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 28234315 - 28234348
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  28234315 atataataggaaaaataacattaatgtttcattg 28234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 3787199 - 3787166
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  3787199 atataatagaaaaaataacattaatgtttcattg 3787166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 8493572 - 8493606
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  8493572 atataataggaaaaataacattaatgtttcattga 8493606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 14310941 - 14310975
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  14310941 atataataggaaaaataacattaatgtttcattga 14310975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 1114488 - 1114521
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  1114488 atataataggaaaaataacattaatgtttcattg 1114521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 2010243 - 2010276
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  2010243 atataataggaaaaataacattaatgtttcattg 2010276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 10364644 - 10364677
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  10364644 atataatagaaaaagtaacattaatgtttcattg 10364677  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 27080508 - 27080541
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  27080508 atataataggaaaaataacattaatgtttcattg 27080541  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 36443620 - 36443587
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  36443620 atataatagaaaaaataacattaatgtttcattg 36443587  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 39293453 - 39293420
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  39293453 atataatagaaaaaataacattaatgtttcattg 39293420  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 12123043 - 12123077
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||||||||||||||||||||||| |||||    
T  12123043 atataatagaaaaaataacattaatgttttattga 12123077  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 36068211 - 36068177
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  36068211 atataataggaaaaataacattaatgtttcattga 36068177  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 1684311 - 1684344
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  1684311 atataatagaaaaagtaacattaatgtttcattg 1684344  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 5669181 - 5669214
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  5669181 atataataggaaaaataacattaatgtttcattg 5669214  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 8341655 - 8341688
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  8341655 atataatagaaaaagtaacattaatgtttcattg 8341688  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 12467736 - 12467703
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||| ||||||||||||||||    
T  12467736 atataatagaaaaaatagcattaatgtttcattg 12467703  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 13196469 - 13196436
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||||||| |||||||||||||||    
T  13196469 atataatagaaaaaataatattaatgtttcattg 13196436  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 14943438 - 14943471
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  14943438 atataataggaaaaataacattaatgtttcattg 14943471  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 16062635 - 16062602
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  16062635 atataataggaaaaataacattaatgtttcattg 16062602  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 22050642 - 22050675
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  22050642 atataatagaaaaaataacattaatatttcattg 22050675  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 25899107 - 25899074
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  25899107 atataatagaaaaagtaacattaatgtttcattg 25899074  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 27244993 - 27244960
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  27244993 atataataggaaaaataacattaatgtttcattg 27244960  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 40833575 - 40833542
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||| |||||||||||||||||||    
T  40833575 atataatagaaaaagtaacattaatgtttcattg 40833542  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 44710008 - 44710041
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  44710008 atataatagaaaaaataacattaatatttcattg 44710041  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 4154 - 4188
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||| ||||||||||||||||||||    
T  4154 atataatagaaaaagtaacattaatgtttcattga 4188  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 39895974 - 39896008
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    |||||||||||||||||||| ||||||||||||||    
T  39895974 atataatagaaaaaataacagtaatgtttcattga 39896008  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 39990375 - 39990409
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattga 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  39990375 atataataggaaaaataacattaatgtttcattga 39990409  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 12503952 - 12503919
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  12503952 atataataggaaaaataacattaatgtttcattg 12503919  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 15268448 - 15268481
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||| ||||||||||||||||||    
T  15268448 atataatagaaaaaacaacattaatgtttcattg 15268481  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 21582692 - 21582725
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  21582692 atataatagaaaaaataacattaatatttcattg 21582725  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 21772822 - 21772855
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  21772822 atataataggaaaaataacattaatgtttcattg 21772855  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 25784705 - 25784738
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  25784705 atataataggaaaaataacattaatgtttcattg 25784738  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 29816311 - 29816278
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  29816311 atataataggaaaaataacattaatgtttcattg 29816278  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 36487390 - 36487357
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    |||||||||||||||||||||||||| |||||||    
T  36487390 atataatagaaaaaataacattaatgcttcattg 36487357  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 40555176 - 40555143
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  40555176 atataatagaaaaaataacattaatatttcattg 40555143  T

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Target: scaffold0160 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 25935 - 25968
Alignment:
Q  19 atataatagaaaaaataacattaatgtttcattg 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  25935 atataataggaaaaataacattaatgtttcattg 25968  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 39870 - 39837
Alignment:
Q  20 tataatagaaaaaataacattaatgtttcattga 53  Q
    ||||| ||||||||||||||||||||||||||||    
T  39870 tataacagaaaaaataacattaatgtttcattga 39837  T

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