View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16929_high_47 (Length: 237)

Name: NF16929_high_47
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16929_high_47
NF16929_high_47
[»] chr6 (22 HSPs)
chr6 (1-221)||(5103595-5103815)
chr6 (1-216)||(5067847-5068062)
chr6 (1-221)||(5095182-5095402)
chr6 (1-213)||(5158200-5158412)
chr6 (1-221)||(5349390-5349610)
chr6 (1-216)||(5424766-5424981)
chr6 (1-200)||(5369498-5369697)
chr6 (1-213)||(5355326-5355538)
chr6 (15-174)||(5132623-5132782)
chr6 (9-214)||(5147591-5147796)
chr6 (1-210)||(5342778-5342987)
chr6 (1-174)||(5260849-5261016)
chr6 (1-100)||(5446219-5446318)
chr6 (1-213)||(5432555-5432767)
chr6 (3-173)||(5176011-5176181)
chr6 (3-173)||(5277838-5278008)
chr6 (1-172)||(5284849-5285014)
chr6 (11-110)||(5074512-5074611)
chr6 (1-106)||(5182682-5182787)
chr6 (1-108)||(5396204-5396311)
chr6 (9-55)||(5382767-5382813)
chr6 (133-170)||(5446345-5446382)
[»] chr4 (8 HSPs)
chr4 (3-110)||(4134579-4134686)
chr4 (3-110)||(4352425-4352532)
chr4 (1-110)||(4334686-4334795)
chr4 (3-74)||(4344146-4344217)
chr4 (3-108)||(4321789-4321894)
chr4 (1-67)||(4125236-4125302)
chr4 (3-110)||(4359602-4359709)
chr4 (15-76)||(6835335-6835396)
[»] chr5 (1 HSPs)
chr5 (1-174)||(8877004-8877177)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-107)||(9444-9550)
[»] chr7 (2 HSPs)
chr7 (1-174)||(36214565-36214738)
chr7 (12-108)||(18934487-18934583)
[»] chr2 (1 HSPs)
chr2 (1-100)||(22585161-22585260)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5103815 - 5103595
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5103815 agatgaagagacttagactgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 5103716  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5103715 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 5103616  T
Q  201 atagttttgatttcttatttt 221  Q
    |||||||||||||||||||||    
T  5103615 atagttttgatttcttatttt 5103595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 5068062 - 5067847
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||     
T  5068062 agatgaagagactcagattgcttcaacttgctggggtaaaccttgatggagattttgaatatctttcgagaaatctgatatggctgtcttggaatggatg 5067963  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    || |||| ||||||||||| | |||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||| || |||||||    
T  5067962 ttgtttaccacatatacctgaaaacttttatagagaaaatttagtttccatcgagttagagaatagcaatgtcaaacttttatggaaagtggcccaggta 5067863  T
Q  201 atagttttgatttctt 216  Q
      ||||||||||||||    
T  5067862 taagttttgatttctt 5067847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5095182 - 5095402
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    |||||| |||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  5095182 agatgacgagactcagattgcttcaacttgctggggttaaacttgatggagattttgaatatctttcgagaaatctgagatggctgtcttggaatggatt 5095281  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    ||||||||||||||||||||  |||||| | | || ||  || ||||||||||||||| |||||||||||||||  |||||||||||||||| |||||||    
T  5095282 ttctttaacacatatacctacaaacttttacaaaggaagcttggtttccatcgagttagagaatagcaatgtcaaacttttatggaaagaggcccaggta 5095381  T
Q  201 atagttttgatttcttatttt 221  Q
      |||||||||||||| ||||    
T  5095382 taagttttgatttcttttttt 5095402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5158412 - 5158200
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||||||||||||||||||||||||| |||| || ||||||| |||||||||| ||||| ||||||||| ||||| || ||||||||||||| ||||    
T  5158412 agatgaagagacttagattgcttcaacttgctggggtcaaacttgttggagattttaaatatatttcgagaagtctgagatggctgtcttggaatagatt 5158313  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    ||||| ||||||||||||||  |||||| ||| ||||||||||||||||||||||||| ||||||||||| |||  |||||||||||||| | |||||||    
T  5158312 ttcttcaacacatatacctacaaacttttatatagaaaatttagtttccatcgagttagagaatagcaatatcaaacttttatggaaagaagcccaggta 5158213  T
Q  201 atagttttgattt 213  Q
      |||||||||||    
T  5158212 taagttttgattt 5158200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5349390 - 5349610
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||||||| || ||| |||||||| ||||     
T  5349390 agatgaagagactcagattgcttcaacttgctggggtaaaacttgatggagattttgaatatctttcaaaaaatctgagatggctttcttggaacggatg 5349489  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    || |||| |||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||  |||||  |||||||||||||||| |||||||    
T  5349490 ttgtttaccacatatacctgcaaacttttatagagaaaatttagtttccatcgagttagagaatagccgtgtcaaacttttatggaaagaggcccaggta 5349589  T
Q  201 atagttttgatttcttatttt 221  Q
      |||||||||||||| ||||    
T  5349590 taagttttgatttcttttttt 5349610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5424766 - 5424981
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    |||||| |||||| ||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||| || |||||||||||||||||     
T  5424766 agatgacgagactcagattgcttcaacttgctggggtaaaacttaatggagattttaaatatctttcgagaaatctgagatggctgtcttggaatggatg 5424865  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||||||| |||||||| |||||   ||||| |||||||| | |||||||    
T  5424866 ttctttaccacatatacctacaaacttttatagagaacatttagtttccatcgagttagagaatagccatgtccaacttttgtggaaagacggccaggta 5424965  T
Q  201 atagttttgatttctt 216  Q
      | ||||||||||||    
T  5424966 taacttttgatttctt 5424981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5369498 - 5369697
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||| | ||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  5369498 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 5369597  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    || |||| |||||||||| |  || ||   |||||||||||||||||||||||||||| |||||||| ||||||  || ||||||||||||| |||||||    
T  5369598 ttgtttagcacatataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 5369697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5355538 - 5355326
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||||||||| | |||||||| |||| |||||||||||||||||||| ||||||||| |||||| ||||||||||  | |||||||||||||| |||    
T  5355538 agatgaagagactgaaattgcttctacttgctggagtaaaacttgatggaaattttgaatgtctttcaagaaatctgaggtggctgtcttggaatgaatt 5355439  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    | |||||||||||||||| |  ||| ||  |  || ||||||||||||||| |||||| |||||||||||||||  ||| | |||||||||| |||||||    
T  5355438 tcctttaacacatataccaacaaacctttttctaggaaatttagtttccatagagttagagaatagcaatgtcaaacttatgtggaaagaggcccaggta 5355339  T
Q  201 atagttttgattt 213  Q
     || |||| ||||    
T  5355338 gtaatttttattt 5355326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 5132782 - 5132623
Alignment:
Q  15 agattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacata 114  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||   ||||| |||||||| | || | ||| ||||||||||||| ||||||||||||    
T  5132782 agattgcttcaacttgatggggtaaaacttgatggagattttgaaatcctttcaagaaatctaagatggttgtgttggaatggatttcctttaacacata 5132683  T
Q  115 tacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtca 174  Q
    ||||||   | ||| ||||||||| ||||||||||||||||||| | |||||||||||||    
T  5132682 tacctacagatttttatagagaaagtttagtttccatcgagttagaaaatagcaatgtca 5132623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 5147796 - 5147591
Alignment:
Q  9 agacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaa 108  Q
    ||||| ||||||||||||||| |||||||| |||||||||| |||||||||||  ||||||||||||||| || ||| ||||||||||||||| || |||    
T  5147796 agactgagattgcttcaacttactggagtacaacttgatggggattttgaatacatttcgagaaatctgagatggctttcttggaatggatttcctctaa 5147697  T
Q  109 cacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagtttt 208  Q
    ||   ||||| |  | |||| ||  || ||||||||||||||| |||||| | ||||||||| |||  ||| | ||||||||   ||||||| || ||||    
T  5147696 catgcatacccacaagcttttatctaggaaatttagtttccattgagttagaaaatagcaatatcaaacttctgtggaaagaaacccaggtattaatttt 5147597  T
Q  209 gatttc 214  Q
    ||||||    
T  5147596 gatttc 5147591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 5342778 - 5342987
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||| | ||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||| ||||| || | || ||| | ||||||||||||    
T  5342778 agatgaataaactaagattgcttcaactttctggcgtacaacttgatggagattttgactatctttctagaaaactaagatggctatgttggaatggatt 5342877  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    | |||||| |   |||||||| |||||| ||  || ||||||||||||||| |||||  | || |||| |||||  ||| | ||||||||| || |||||    
T  5342878 tcctttaagatgcatacctaaaaactttgatcaaggaaatttagtttccatggagtttgaaaacagcagtgtcaaacttctgtggaaagagaacaaggta 5342977  T
Q  201 atagttttga 210  Q
     || ||||||    
T  5342978 ttaattttga 5342987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5261016 - 5260849
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    |||||||||| || ||||||||||||||| ||| ||||||||||||||| |||||||||||| |||| ||| || ||| | ||||||| |||||||||      
T  5261016 agatgaagagtctcagattgcttcaacttgctgaagtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatgga-- 5260919  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtca 174  Q
        ||||  || |||||||  |||||  || |||||||||||||||||||||||||| |||| | ||||||||    
T  5260918 ----ttaagtcacatacctacaaacttctatggagaaaatttagtttccatcgagttagagaacatcaatgtca 5260849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5446219 - 5446318
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||||||||| ||||| ||||||||| |||  ||||||||||||||||||||||||||| |||||||| |||| | || |||||| |||||||||||    
T  5446219 agatgaagagactcagatttcttcaacttgctgaggtaaaacttgatggagattttgaatatgtttcgagagatctaacatggctgtcatggaatggatt 5446318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 5432555 - 5432767
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||||| ||| ||||||||| ||||| |||| ||  | ||||||||  |||||||| ||||||| |||||||||| || ||| ||||||||||||||    
T  5432555 agatgaagaaactcagattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatggatt 5432654  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 200  Q
    | | ||| ||   |||||||  |||||| ||  || |||||||||||||||||||||| | || || |||||||    ||| |||||||||  |||||||    
T  5432655 tccgttatcatgcatacctacaaacttttatcaagcaaatttagtttccatcgagttagaaaacagtaatgtcaaagatttgtggaaagagacccaggta 5432754  T
Q  201 atagttttgattt 213  Q
     ||| ||||||||    
T  5432755 ttaggtttgattt 5432767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 5176011 - 5176181
Alignment:
Q  3 atgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatttt 102  Q
    ||||||| ||| || |||||||||||| |||| ||  |||||||||| |||||||| |||||||| |||||||||| || ||| |||||||||||||||     
T  5176011 atgaagaaactcaggttgcttcaacttgctggtgtgcaacttgatggggattttgagtatctttcaagaaatctgagatggctttcttggaatggatttc 5176110  T
Q  103 ctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtc 173  Q
    ||||| ||   || |||   | |||| ||  || |||||||||||||||||||||| | || |||||||||    
T  5176111 ctttatcatgcattccttcaagcttttatcaaggaaatttagtttccatcgagttagaaaacagcaatgtc 5176181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 5277838 - 5278008
Alignment:
Q  3 atgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatttt 102  Q
    ||||||| ||| || |||||||||||| |||| ||  |||||||||| |||||||| |||||||| |||||||||| || ||| |||||||||||||||     
T  5277838 atgaagaaactcagtttgcttcaacttgctggtgtgcaacttgatggggattttgagtatctttcaagaaatctgagatggctttcttggaatggatttc 5277937  T
Q  103 ctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtc 173  Q
    ||||| ||   || |||   | |||| ||  || |||||||||||||||||||||| | || |||||||||    
T  5277938 ctttatcatgcattccttcaagcttttatcaaggaaatttagtttccatcgagttagaaaacagcaatgtc 5278008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 5285014 - 5284849
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    |||||||||| || ||||||||||||||| | | ||||||||||||||| |||||||||||| |||| ||| || ||| | ||||||| |||||||||      
T  5285014 agatgaagagtctcagattgcttcaacttgcagaagtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatgga-- 5284917  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgt 172  Q
        ||||  ||||||||||  |||||  || ||||||||||| ||||||| |||||| |||| | ||||||    
T  5284916 ----ttaagtcatatacctacaaacttctatggagaaaatttaatttccattgagttagagaacatcaatgt 5284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 5074611 - 5074512
Alignment:
Q  11 acttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaaca 110  Q
    |||| |||||||||||||| |||| ||| |||||||||| ||||||||| ||||||| |||||| ||| || ||| || |||||||||||| ||||||||    
T  5074611 acttcgattgcttcaacttgctggtgtacaacttgatggggattttgaacatctttcaagaaatttgagatggctttcatggaatggatttcctttaaca 5074512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 5182787 - 5182682
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||| | ||||||| ||||||||||| || | ||| ||||||| || || |||||||||||||| |||||||||| || ||| ||||||||||||||    
T  5182787 agatgaaaaaacttagactgcttcaacttgctagtgtacaacttgagggggactttgaatatctttcaagaaatctgatatggctttcttggaatggatt 5182688  T
Q  101 ttcttt 106  Q
    | ||||    
T  5182687 tccttt 5182682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 5396204 - 5396311
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||| | ||| ||| ||||||||||| ||||  || |||||||||| ||||||||||||||||| |||||| ||| || ||| |||||||||| |||    
T  5396204 agatgaaaaaactcagactgcttcaacttgctggtttacaacttgatggtgattttgaatatctttcaagaaatgtgagatggctttcttggaatgcatt 5396303  T
Q  101 ttctttaa 108  Q
    | ||||||    
T  5396304 tcctttaa 5396311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 5382767 - 5382813
Alignment:
Q  9 agacttagattgcttcaactttctggagtaaaacttgatggagattt 55  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  5382767 agactaagattgcttcaacttgctggagtacaacttgatggagattt 5382813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 5446345 - 5446382
Alignment:
Q  133 gagaaaatttagtttccatcgagttacagaatagcaat 170  Q
    |||||||||||||||||||||||||| |||||||||||    
T  5446345 gagaaaatttagtttccatcgagttagagaatagcaat 5446382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 4134686 - 4134579
Alignment:
Q  3 atgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatttt 102  Q
    ||||||| ||| ||||||||||||| |||||| ||| ||||||||||||||||| |||||||||| |||||| ||| || ||||| |||||||| ||||     
T  4134686 atgaagaaactgagattgcttcaaccttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgagatggctgtgttggaatgaatttc 4134587  T
Q  103 ctttaaca 110  Q
    ||||||||    
T  4134586 ctttaaca 4134579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 4352425 - 4352532
Alignment:
Q  3 atgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatttt 102  Q
    ||||||| ||| |||||||| ||||||||||| ||| ||||||||||||||||| |||||||||| |||||| |||||| ||||   ||||||||||||     
T  4352425 atgaagaaactcagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgaaatggctgcactggaatggatttc 4352524  T
Q  103 ctttaaca 110  Q
    ||||||||    
T  4352525 ctttaaca 4352532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 4334686 - 4334795
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||||| ||| |||||||||||||||||||| | | ||||||||||||||||| |||||||||| |||||  ||| || ||||   |||||||||||    
T  4334686 agatgaagaaactcagattgcttcaactttctggcgcacaacttgatggagattttaaatatctttccagaaagttgagatggctgcactggaatggatt 4334785  T
Q  101 ttctttaaca 110  Q
    | ||||||||    
T  4334786 tcctttaaca 4334795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 4344146 - 4344217
Alignment:
Q  3 atgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaat 74  Q
    ||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||| ||||||    
T  4344146 atgaagaaacttagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttcaagaaat 4344217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 4321894 - 4321789
Alignment:
Q  3 atgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatttt 102  Q
    ||||||| ||| |||||||| ||||||||||| ||| ||||||||||||||||| ||||| |||| |||||| | |||| ||||   ||||||||||||     
T  4321894 atgaagaaactcagattgctgcaactttctggtgtacaacttgatggagattttaaatatatttcaagaaatttaaaatggctgcactggaatggatttc 4321795  T
Q  103 ctttaa 108  Q
    ||||||    
T  4321794 ctttaa 4321789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4125302 - 4125236
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttc 67  Q
    ||||||||| ||| |||||||||||||||||||| | | ||||||||||||||||| ||||||||||    
T  4125302 agatgaagaaactcagattgcttcaactttctggtgcacaacttgatggagattttaaatatctttc 4125236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 4359602 - 4359709
Alignment:
Q  3 atgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatttt 102  Q
    ||||||| ||| |||||||| |||||||| || ||| ||||||||||||||||| || ||||||| |||||  ||| || ||||   ||||||||||||     
T  4359602 atgaagaaactcagattgctgcaactttccggtgtacaacttgatggagattttaaacatctttcaagaaaattgagatggctgcagtggaatggatttc 4359701  T
Q  103 ctttaaca 110  Q
    ||||||||    
T  4359702 ctttaaca 4359709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 6835335 - 6835396
Alignment:
Q  15 agattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatct 76  Q
    ||||||||||||||| |||| || |||||| | ||||||||| || | ||||||||||||||    
T  6835335 agattgcttcaacttgctggggtgaaacttaaaggagattttaaacacctttcgagaaatct 6835396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 8877004 - 8877177
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||||||||| ||||||||||||||| | || ||| ||||||||||| | ||||||| |||||| | |||||||| |||| | |||||||||| |||    
T  8877004 agatgaagagactcagattgcttcaacttgccggcgtacaacttgatggaaactttgaatttctttccaaaaatctgagattgttatcttggaatgcatt 8877103  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtca 174  Q
    | |||||||    |||||||   ||||| ||  ||||||||| || || ||||||||| | |||||||||||||    
T  8877104 tcctttaacctgcatacctaccgacttttatcaagaaaatttggtatctatcgagttagaaaatagcaatgtca 8877177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9550 - 9444
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||| || |||||||| ||||| || | || ||||| |||||| |||||    
T  9550 agatggagagactaagattgcttcaacttgctggagtacaacttgatggagatttcgagtatctttcaagaaaactaagatggctgtgttggaaaggatt 9451  T
Q  101 ttcttta 107  Q
    | |||||    
T  9450 tccttta 9444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 36214738 - 36214565
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    ||||||| ||||| ||||||||||||||| |||| ||| |||||||||| || ||||| |||||||| | |||| ||| || ||| ||||||||||| ||    
T  36214738 agatgaaaagactcagattgcttcaacttgctggtgtacaacttgatggggactttgagtatctttcaaaaaatttgagatggctttcttggaatggttt 36214639  T
Q  101 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtca 174  Q
    | ||||||||   || |||   | |||| ||  |||||||||||||||||| |||||| | || ||||||||||    
T  36214638 tcctttaacatgcattccttcaagcttttatcaagaaaatttagtttccattgagttagaaaacagcaatgtca 36214565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 18934487 - 18934583
Alignment:
Q  12 cttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaa 108  Q
    |||| |||||||||||||||||| ||| ||||| |||||||||   |||||||||||| | |||| | |||||| | |||| |||||||| ||||||    
T  18934487 cttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaa 18934583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22585260 - 22585161
Alignment:
Q  1 agatgaagagacttagattgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 100  Q
    |||||||  |||| ||||||||||||||| ||| ||||||||||||||| || |||  |||| |||| ||| |  ||| ||||||||| |||||||||||    
T  22585260 agatgaaaggactcagattgcttcaacttgctgaagtaaaacttgatggggactttagatatgtttcaagagagttgagattgctgtcatggaatggatt 22585161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University