View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_high_49 (Length: 237)
Name: NF16929_high_49
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9546605 - 9546388
Alignment:
| Q |
1 |
agatagagaaagtgaaactgaatcatcaaagaatccaactggtccacgatccaaacgggtcaagaaagat---gatccggtgaaaaactcagtacagaat |
97 |
Q |
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| T |
9546605 |
agatagaggaagtgaaactgagtcgtcaaagaatccaactggaccacgatccaaacgggtcaagaaagataatgatccggtgaaaaactcagtacagaac |
9546506 |
T |
|
| Q |
98 |
gagtctgtttctgtactgagttcttcatcggatataacaactgaagaagaagtagcnnnnnnnctcatatcattgtctcgcgaagataacaacatatgga |
197 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9546505 |
gagtctttttctgtactgagttcttcatcggatataacaactgaagaagaagtagctttttttctcatatcattgtctcgcgaagataacaacatatgga |
9546406 |
T |
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| Q |
198 |
aaactcatacacaacgtc |
215 |
Q |
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|||||||||||||||||| |
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| T |
9546405 |
aaactcatacacaacgtc |
9546388 |
T |
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